RetrogeneDB ID: | retro_fcat_986 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B4:105810702..105811039(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | C6orf57 | ||
Ensembl ID: | ENSFCAG00000026799 | ||
Aliases: | None | ||
Description: | chromosome 6 open reading frame 57 [Source:HGNC Symbol;Acc:20957] |
Percent Identity: | 67.26 % |
Parental protein coverage: | 98.25 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | AGVGNMTVTRLARLLGYIPATAWRAARSPLVCCSVRKMSSQGEK-SKPIKQSHKKPKLPEGRFDAPEDPN |
A.VG.M.V...A...G.IPAT..R.ARSPL....VRKMSSQGEK.SK.IK.S.KKPKLPEG.FDAPED.. | |
Retrocopy | AQVGTMIVSGVAGWPGCIPATV*RVARSPLLSHPVRKMSSQGEK>SKAIK*SLKKPKLPEGCFDAPEDSH |
Parental | LEKEPLTKFPDDINPVTKEKGGPRGPEPTRYGDWERKGRCIDF |
LEKEP..KF.DD.NPVTK.KGGPR.PEP..YG.W..K..CIDF | |
Retrocopy | LEKEPAAKFLDDVNPVTKDKGGPRAPEPNQYGNWR*KVHCIDF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 23 .41 RPM |
SRP017611_kidney | 0 .00 RPM | 11 .75 RPM |
SRP017611_liver | 0 .00 RPM | 11 .83 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000002602 | 2 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000011410 | 6 retrocopies | |
Erinaceus europaeus | ENSEEUG00000011260 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000011154 | 1 retrocopy | |
Felis catus | ENSFCAG00000026799 | 1 retrocopy |
retro_fcat_986 ,
|
Rattus norvegicus | ENSRNOG00000028087 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000004344 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000001769 | 1 retrocopy |