RetrogeneDB ID: | retro_ggor_1336 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 17:21865405..21866538(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ENSG00000110934 | ||
Ensembl ID: | ENSGGOG00000009423 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 84.96 % |
Parental protein coverage: | 70.26 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | YVAQFSEIKERIAKRGRKLVDYDSARHHLEAVQNAKKKDEAKTAKAEEEFNKAQTVFEDLNQELLEELPI |
Y..QFSEI.ERIAK.G.KLVDYD.A.HHL.AVQNAKKKDEAKTAKAEEEFNKAQT.FEDLNQ.LLEELPI | |
Retrocopy | YFTQFSEIEERIAKWG*KLVDYDGAQHHLDAVQNAKKKDEAKTAKAEEEFNKAQTMFEDLNQKLLEELPI |
Parental | LYNSRIGCYVTIFQNISNLRDVFYREMSKLNHNLYEVMSKLEKQHSNKVFVVKGLSSSSRRSLVISPPVR |
LYNS.IGCYVTIFQNISNLRDVFYREMSKLN.NLYEVMSKL.KQHSNKVFVVKGLSSSSR.SLVI.PPVR | |
Retrocopy | LYNSHIGCYVTIFQNISNLRDVFYREMSKLNCNLYEVMSKLQKQHSNKVFVVKGLSSSSRLSLVIYPPVR |
Parental | TATVSSPLTSPTSPSTLSLKSESESVSATEDLAPDAAQG-EDNSEIKELLEEEEIEKEGSEASSSEEDEP |
T...SSPLTSPTSPSTLSLKSESESV..TEDLAPDAA.G.EDNSEIKE.LE.EEIEKEGS.ASSSEE.EP | |
Retrocopy | TSMASSPLTSPTSPSTLSLKSESESVTTTEDLAPDAARG<EDNSEIKEHLEDEEIEKEGSDASSSEEEEP |
Parental | LPACNGPAQAQPSPTTESAKSQEEVLPSSPAPSPGGALSPSGQPSSSAAEVVLRTRTASEGSEQPKKRAS |
LPAC.GPA.AQPSPT..S.KSQEEVLPSSPA.SPG..LSPSGQPSSSA.EVVL.TRT.SEGSEQPKK... | |
Retrocopy | LPACSGPA*AQPSPTIGSGKSQEEVLPSSPALSPGRTLSPSGQPSSSATEVVLQTRTESEGSEQPKKKTY |
Parental | IQRTSAPPSRPPPPRATASPRPSSGNIPSSPTASGGGSPTSPRASLRTGTPSPRTSLEVFPNPEPPEKPV |
IQRTSA.PSRPPPPRAT..PR.SSGNIPSSP.ASGGGS.T.PR.SL.T.TPSPRTSLE..PNPE..EKPV | |
Retrocopy | IQRTSALPSRPPPPRATPNPRTSSGNIPSSPPASGGGSTTGPRVSLGTETPSPRTSLEFSPNPELQEKPV |
Parental | RTPEAKENENIHNQNPEELCTSPTLMTSQ |
RTPE.KENENIHNQNP.ELCT.PTLMTSQ | |
Retrocopy | RTPEVKENENIHNQNPKELCTFPTLMTSQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .05 RPM | 3 .26 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .95 RPM |
SRP007412_heart | 0 .00 RPM | 1 .28 RPM |
SRP007412_kidney | 0 .00 RPM | 4 .33 RPM |
SRP007412_liver | 0 .11 RPM | 10 .18 RPM |
SRP007412_testis | 0 .21 RPM | 21 .45 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3192 |
Pan troglodytes | retro_ptro_2251 |
Pongo abelii | retro_pabe_2648 |
Macaca mulatta | retro_mmul_2013 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000110934 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000009423 | 1 retrocopy |
retro_ggor_1336 ,
|
Loxodonta africana | ENSLAFG00000002387 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000017774 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000004526 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000004954 | 2 retrocopies |