RetrogeneDB ID: | retro_ptro_2049 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 4:47740044..47741162(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BIN2 | ||
Ensembl ID: | ENSPTRG00000004954 | ||
Aliases: | None | ||
Description: | bridging integrator 2 [Source:HGNC Symbol;Acc:1053] |
Percent Identity: | 88.5 % |
Parental protein coverage: | 69.98 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | ELLEELPILYNSRIGCY-VTIFQNISNLRDVFYREMSKLNHNLYEVMSKLEKQHSNKVFVVKGLSSSSRR |
.LLEELPILYNS..G...VTIFQNISNLRDVFYREMSKLNHNL.EVMSKLEKQHS.KVFVVK.LSSSSRR | |
Retrocopy | KLLEELPILYNSHTGSM<VTIFQNISNLRDVFYREMSKLNHNLSEVMSKLEKQHSSKVFVVKRLSSSSRR |
Parental | SLVISPPVQTATVSSPLTSPTSPSTLSLKSESESVSATEDLAPDAAQGEDNSEIKELLEEEEIEKEGSEA |
SLVISPPV.T.TVSSPLTSPTSPSTLS.KS.SESVSATEDLAPDAAQGEDNS.IKELLE.EEI.KEGSEA | |
Retrocopy | SLVISPPVRTSTVSSPLTSPTSPSTLSSKSKSESVSATEDLAPDAAQGEDNS*IKELLEDEEIGKEGSEA |
Parental | SSSEEDEPLPACNGPAQAQPSPTTESAKSQEEVLPSSPAPSPGGALSPSGQPSSSAAEVVLRTRTASEGS |
SSSEE.EPL..CNGP.QAQPSP..ESA.SQEEV.PSSPA.SPGGALSPSG.P.SSAAEVVL.TRTA...S | |
Retrocopy | SSSEEEEPLLTCNGPSQAQPSPIIESARSQEEVPPSSPALSPGGALSPSGHPLSSAAEVVL*TRTAGDKS |
Parental | EQPKKRASIQRTSAPPSRPPPPRATASPRPSSGNIPSSPTASGGGSPTSPRASLGTGTPSPRTSLEVSPN |
EQ.KKRASIQRTSAPPSRPPPPRATASPRPSSGNIPSSP.ASGGGSPTSPRASLGTGTPSPRTSLEVSPN | |
Retrocopy | EQSKKRASIQRTSAPPSRPPPPRATASPRPSSGNIPSSPPASGGGSPTSPRASLGTGTPSPRTSLEVSPN |
Parental | PEPPEKPVRTPEAKENENIHNQNPEELCTSPTLMTSQVASEPGEAKKMEDKEEDNKLISADSSEGQDQLQ |
PEPPEKPVRTPEAKENENIHNQN.EELCTSPTLMTSQ.ASEPGEAKKMEDKE.DNKL.SADSSEGQDQL. | |
Retrocopy | PEPPEKPVRTPEAKENENIHNQNLEELCTSPTLMTSQIASEPGEAKKMEDKENDNKLVSADSSEGQDQLK |
Parental | VFTVPENNNLTAPEPQEEVSTSEN |
V.TVP...NLTA.EPQEEVSTSEN | |
Retrocopy | VSTVPDKSNLTASEPQEEVSTSEN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 4 .52 RPM |
SRP007412_cerebellum | 0 .00 RPM | 4 .30 RPM |
SRP007412_heart | 0 .00 RPM | 2 .71 RPM |
SRP007412_kidney | 0 .00 RPM | 9 .07 RPM |
SRP007412_liver | 0 .03 RPM | 7 .89 RPM |
SRP007412_testis | 0 .00 RPM | 61 .65 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2952 |
Pongo abelii | retro_pabe_2448 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000110934 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000009423 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000002387 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000017774 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000004526 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000004954 | 2 retrocopies |
retro_ptro_2049 , retro_ptro_2251,
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