RetrogeneDB ID: | retro_ggor_1811 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 2b:105693044..105693394(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSGGOG00000025590 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL31 | ||
Ensembl ID: | ENSGGOG00000006432 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 77.97 % |
Parental protein coverage: | 93.6 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | AKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVW |
AK.G..KKKGRSAINEVVT.EY.I.IHK.IHG.GFKKRA..ALKEI.KFA.KEM.TPDV.ID..LNKAV. | |
Retrocopy | AKMGDKKKKGRSAINEVVTQEYIIDIHKCIHGGGFKKRASQALKEIQKFATKEMATPDVHIDASLNKAV* |
Parental | AKGIRNV-PYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTV |
AKGIRN..PY.I.V.LSRK.NED.DSPNKLYTLVTYVPVTTFKNLQ.. | |
Retrocopy | AKGIRNI<PYCICVWLSRKHNEDKDSPNKLYTLVTYVPVTTFKNLQSM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 115 .33 RPM |
SRP007412_cerebellum | 0 .04 RPM | 89 .63 RPM |
SRP007412_heart | 0 .00 RPM | 55 .72 RPM |
SRP007412_kidney | 0 .00 RPM | 292 .60 RPM |
SRP007412_liver | 0 .03 RPM | 317 .14 RPM |
SRP007412_testis | 0 .00 RPM | 156 .44 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2388 |