RetrogeneDB ID: | retro_ggor_1839 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 3:33401083..33401454(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSGGOG00000025842 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL31 | ||
Ensembl ID: | ENSGGOG00000006432 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 81.89 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MAPAKKGGEKKKGRSAINEVVTREYTIN-IHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLN |
MA..KKGG.KKKGRSAINEVVT.EYTIN.IHKR.HGV.FKK.AP.ALKEIRKFAMKEM..PDV...TRLN | |
Retrocopy | MASTKKGGQKKKGRSAINEVVTQEYTINNIHKRTHGVRFKKCAPWALKEIRKFAMKEMVAPDVCVATRLN |
Parental | KAVWAKGIRNVPYRIRVRLSR-KRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVDEN |
KAVWAKGIRNV.Y.IRVRLSR....ED...PNKLYTLVTYVPVTTFKNLQTVNVDEN | |
Retrocopy | KAVWAKGIRNVSY*IRVRLSR<NKDED--LPNKLYTLVTYVPVTTFKNLQTVNVDEN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .05 RPM | 115 .33 RPM |
SRP007412_cerebellum | 0 .04 RPM | 89 .63 RPM |
SRP007412_heart | 0 .00 RPM | 55 .72 RPM |
SRP007412_kidney | 0 .00 RPM | 292 .60 RPM |
SRP007412_liver | 0 .00 RPM | 317 .14 RPM |
SRP007412_testis | 0 .00 RPM | 156 .44 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2627 |