RetrogeneDB ID: | retro_acar_168 | ||
Retrocopylocation | Organism: | Anole lizard (Anolis carolinensis) | |
Coordinates: | GL343289.1:913097..913403(-) | ||
Located in intron of: | ENSACAG00000008602 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL31 | ||
Ensembl ID: | ENSACAG00000007914 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 85.29 % |
Parental protein coverage: | 81.6 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | EYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRN |
EYTINI.K.IHGVGFKKR.PRAL.EIRKFAMKEMGTPDVRIDT.LNK.VWAKGIRNVPYR.R..LS.K.N | |
Retrocopy | EYTINIQK*IHGVGFKKRVPRALEEIRKFAMKEMGTPDVRIDTCLNKVVWAKGIRNVPYRTRGCLSQKHN |
Parental | EDEDSPNKLYTLVTYVPVTTFKSLQTVNVDEN |
EDEDS.NKLYTLV.YVPVTTF.SLQTVN.DEN | |
Retrocopy | EDEDSLNKLYTLVVYVPVTTFRSLQTVNADEN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP009831_adrenal | 0 .00 RPM | 3022 .57 RPM |
SRP009831_brain | 0 .00 RPM | 219 .71 RPM |
SRP009831_dewlap | 0 .00 RPM | 174 .91 RPM |
SRP009831_embryo | 0 .00 RPM | 674 .48 RPM |
SRP009831_heart | 0 .00 RPM | 437 .16 RPM |
SRP009831_liver | 0 .00 RPM | 594 .92 RPM |
SRP009831_lung | 0 .00 RPM | 367 .47 RPM |
SRP009831_ovary | 0 .00 RPM | 72 .85 RPM |
SRP009831_skeletal_muscle | 0 .00 RPM | 187 .72 RPM |