RetrogeneDB ID: | retro_ggor_2345 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 6:62914978..62915243(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CRB3 | ||
Ensembl ID: | ENSGGOG00000007070 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 56.84 % |
Parental protein coverage: | 72. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MANPGLGLLLALGLPFLLARWGRAWGQIQTASA---NEDSTVLPSSTSSSSSSDGNLRPEAT-TAII-VV |
MANPGLGLLLAL.LP.L.A..G.A..Q..TA.A...NE.ST..P.....SSSS.G.L...A..TAI..V. | |
Retrocopy | MANPGLGLLLALALPLLQACLGPALRQTSTAGAPSVNESSTIMPT----SSSSKGTLSQGAS<TAIM<VD |
Parental | FSLLAALLLAVGLALLVRKLREKRQ |
.S.LA..LLAVGL.LLV.KL.EK.. | |
Retrocopy | *SILATPLLAVGLELLVQKLQEKHR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 0 .14 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .35 RPM |
SRP007412_heart | 0 .00 RPM | 0 .03 RPM |
SRP007412_kidney | 0 .00 RPM | 5 .15 RPM |
SRP007412_liver | 0 .03 RPM | 2 .66 RPM |
SRP007412_testis | 0 .00 RPM | 0 .00 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3478 |
Pan troglodytes | retro_ptro_2984 |
Pongo abelii | retro_pabe_2873 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000016567 | 1 retrocopy | |
Homo sapiens | ENSG00000130545 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000007070 | 2 retrocopies |
retro_ggor_1910, retro_ggor_2345 ,
|
Macaca mulatta | ENSMMUG00000005599 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000015936 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000009457 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000010367 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000047322 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000002396 | 1 retrocopy |