RetrogeneDB ID: | retro_hsap_3478 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 6:64102159..64102424(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000218617 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CRB3 | ||
Ensembl ID: | ENSG00000130545 | ||
Aliases: | None | ||
Description: | crumbs homolog 3 (Drosophila) [Source:HGNC Symbol;Acc:20237] |
Percent Identity: | 61.29 % |
Parental protein coverage: | 73.33 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MANPGLGLLLALGLPFLLARWGRAWGQIQTT---SANENSTVLPSSTSSSSDGNLRPEA-ITAII-VVFS |
MANPGLGLLLALGLP.L.A..G.A..Q..T....S.NE.ST..P..TSSSS.G.L...A.ITAI..V..S | |
Retrocopy | MANPGLGLLLALGLPLLQACLGPALRQTSTAGAPSVNESSTIMP--TSSSSKGTLSQGA<ITAIM<VD*S |
Parental | LLAALLLAVGLALLVRKLREKRQ |
.LA.LLLAVGL.LLV.KL.EK.. | |
Retrocopy | ILATLLLAVGLELLVQKLQEKHR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 0 .18 RPM |
bodymap2_adrenal | 0 .00 RPM | 0 .31 RPM |
bodymap2_brain | 0 .00 RPM | 0 .07 RPM |
bodymap2_breast | 0 .00 RPM | 0 .25 RPM |
bodymap2_colon | 0 .00 RPM | 1 .06 RPM |
bodymap2_heart | 0 .00 RPM | 0 .00 RPM |
bodymap2_kidney | 0 .00 RPM | 8 .35 RPM |
bodymap2_liver | 0 .00 RPM | 5 .58 RPM |
bodymap2_lung | 0 .00 RPM | 5 .41 RPM |
bodymap2_lymph_node | 0 .00 RPM | 0 .24 RPM |
bodymap2_ovary | 0 .00 RPM | 0 .33 RPM |
bodymap2_prostate | 0 .00 RPM | 2 .53 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 0 .00 RPM |
bodymap2_testis | 0 .00 RPM | 0 .55 RPM |
bodymap2_thyroid | 0 .00 RPM | 5 .14 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 0 .28 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_2984 |
Gorilla gorilla | retro_ggor_2345 |
Pongo abelii | retro_pabe_2873 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000016567 | 1 retrocopy | |
Homo sapiens | ENSG00000130545 | 2 retrocopies |
retro_hsap_2747, retro_hsap_3478 ,
|
Gorilla gorilla | ENSGGOG00000007070 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000005599 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000015936 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000009457 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000010367 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000047322 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000002396 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .03 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |