RetrogeneDB ID: | retro_ggor_2530 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 7:92010163..92010631(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP5F1 | ||
Ensembl ID: | ENSGGOG00000005215 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 67.08 % |
Parental protein coverage: | 61.72 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | TFTALSVLG-VMVYGIKKYGPFVAD-FADKLNE-QKLAQLEEAKQASIQHIQNAIDMEKSQQALVQKRHY |
.....SV.G...VY.I.KYG....D..ADKL...QK.AQLEE.KQASI..IQ..I..EK..Q.LVQK.HY | |
Retrocopy | SYSTVSVVG<LLVYVI*KYGASIGD<LADKLSS<QKIAQLEEVKQASIKQIQDTIHLEKLFQVLVQKCHY |
Parental | LFDVQRNNIAMALEVTYRERLYRVYKEVKNRLDYHISVQNMMRRKEQEHMINWVEKHVVQSISTQQEKET |
.FDVQRNNIAMALEV.Y..RL..VYK.VKN.LDYH..V.NMM..KEQEHMINWVEKH..Q.IS.QQEKET | |
Retrocopy | YFDVQRNNIAMALEVIYWKRLHSVYK-VKNHLDYHMCV*NMMHQKEQEHMINWVEKHMLQRISAQQEKET |
Parental | IAKCIADLKLLAKKAQAQPVM |
.AKCIA.LKLL.KKAQAQPV. | |
Retrocopy | VAKCIANLKLLSKKAQAQPVL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 56 .54 RPM |
SRP007412_cerebellum | 0 .00 RPM | 41 .64 RPM |
SRP007412_heart | 0 .00 RPM | 50 .78 RPM |
SRP007412_kidney | 0 .00 RPM | 103 .29 RPM |
SRP007412_liver | 0 .00 RPM | 52 .28 RPM |
SRP007412_testis | 0 .00 RPM | 110 .13 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3762 |
Pan troglodytes | retro_ptro_2553 |