Parental gene:

ENSCJAG00000013353

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:7:147407296..147420123(+)


>ENSCJAG00000013353
ATGCTGTCCCGAGTGGTACTTTCTGCTGCCGCCACAGCGGCCCCCTCTCTGAAGAATGCAGCCTTCCTAGGTCCAGGGGT
ATTGCAAGCAACAAGGACCTTTCACACAGAGCAGCCACACCTTGCCCCTGTACCACCTCTTCCTGAATATGGAGGAAAAG
TTCGTCATGGACTGATCCCTGAGGAATTCTTTCAGTATCTTTATCCTAAAACTGGTGTAACAGGACCCTATGTGCTTGGA
ACTGGGCTTATCTTGTATGCCTTATCCAAAGAAATATATGTGATTACTGGAGAGACCATCACTGGCCTAGCAGTAATAGG
GTTATATATCTTTGGAGTTAAAAAGTTTGGTCCTTCTGTTGCAGCATTTGCTGATAAACTCAATGAGCAAAAACTTGCCC
AACTGGAAGAGGCAAAGCAGGCTTCTATCAAACAAATCCAGGATGCAGTTGATATGGAGAAGGCACAGCAGGCACTGGTT
CAGAAGCGCCACTACCTTTTTGATGTGCAGAGGAATAACATTGCTCTGGCTTTGGAGGTTACTTACCGGGAACGACTGCA
TAGGGTATATAAGGAAGTAAAGAATCGCCTGGACTATCACATATCTGTGCAGAACATGATGCGTCGAAAGGAACAAGAGC
ACATGATAAATTGGGTGGAGAAGCACGTGGTGCAGAGCATCTCTGCACAGCAGGAAAAGGAGACAATTGCCAAGTGCATT
GCTGACCTAAAGCTGCTGGCAAAGAAGGCTCAAGCACAGCCAGTTATGTAA

Library Parental gene expression (RPM)
SRP051959_colon 45 .28 RPM
SRP051959_heart 90 .44 RPM
SRP051959_kidney 67 .60 RPM
SRP051959_liver 90 .17 RPM
SRP051959_lung 28 .34 RPM
SRP051959_lymph_node 29 .15 RPM
SRP051959_skeletal_muscle 111 .50 RPM
SRP051959_spleen 31 .66 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000005433 ortholog_one2many 1 retrogene
retro_amel_1118,
Bos taurus ENSBTAG00000006441 ortholog_one2many 1 retrogene
retro_btau_745,
Cavia porcellus ENSCPOG00000014070 ortholog_one2many 3 retrogenes
retro_cpor_1120, retro_cpor_448, retro_cpor_563,
Equus caballus ENSECAG00000018599 ortholog_one2many 1 retrogene
retro_ecab_494,
Echinops telfairi ENSETEG00000010713 ortholog_one2many 3 retrogenes
retro_etel_105, retro_etel_1784, retro_etel_408,
Felis catus ENSFCAG00000028321 ortholog_one2many 1 retrogene
retro_fcat_1012,
Homo sapiens ENSG00000116459 ortholog_one2many 6 retrogenes
retro_hsap_1705, retro_hsap_1951, retro_hsap_3673, retro_hsap_3762, retro_hsap_3812, retro_hsap_828,
Gorilla gorilla ENSGGOG00000005215 ortholog_one2many 6 retrogenes
retro_ggor_1279, retro_ggor_1721, retro_ggor_2482, retro_ggor_2530, retro_ggor_2564, retro_ggor_678,
Loxodonta africana ENSLAFG00000004809 ortholog_one2many 1 retrogene
retro_lafr_602,
Microcebus murinus ENSMICG00000011992 ortholog_one2many 1 retrogene
retro_mmur_846,
Myotis lucifugus ENSMLUG00000012417 ortholog_many2many 1 retrogene
retro_mluc_2184,
Macaca mulatta ENSMMUG00000003313 ortholog_many2many 3 retrogenes
retro_mmul_1086, retro_mmul_1659, retro_mmul_1791,
Mus musculus ENSMUSG00000000563 ortholog_one2many 2 retrogenes
retro_mmus_2215, retro_mmus_791,
Nomascus leucogenys ENSNLEG00000003971 ortholog_one2many 8 retrogenes
retro_nleu_172, retro_nleu_2090, retro_nleu_2153, retro_nleu_2154, retro_nleu_2546, retro_nleu_260, retro_nleu_524, retro_nleu_975,
Oryctolagus cuniculus ENSOCUG00000007809 ortholog_many2many 1 retrogene
retro_ocun_25,
Otolemur garnettii ENSOGAG00000011486 ortholog_many2many 3 retrogenes
retro_ogar_2102, retro_ogar_2295, retro_ogar_2887,
Pongo abelii ENSPPYG00000001032 ortholog_one2many 3 retrogenes
retro_pabe_2056, retro_pabe_3012, retro_pabe_3111,
Pan troglodytes ENSPTRG00000001099 ortholog_one2many 5 retrogenes
retro_ptro_1154, retro_ptro_1305, retro_ptro_2553, retro_ptro_2586, retro_ptro_578,
Pteropus vampyrus ENSPVAG00000010604 ortholog_one2many 3 retrogenes
retro_pvam_1061, retro_pvam_1110, retro_pvam_283,
Sorex araneus ENSSARG00000002107 ortholog_one2many 3 retrogenes
retro_sara_424, retro_sara_428, retro_sara_610,
Sarcophilus harrisii ENSSHAG00000013185 ortholog_one2many 1 retrogene
retro_shar_700,
Ictidomys tridecemlineatus ENSSTOG00000007630 ortholog_one2many 3 retrogenes
retro_itri_1146, retro_itri_1219, retro_itri_503,
Tarsius syrichta ENSTSYG00000000420 ortholog_one2many 5 retrogenes
retro_tsyr_1226, retro_tsyr_1553, retro_tsyr_1852, retro_tsyr_502, retro_tsyr_511,
Tursiops truncatus ENSTTRG00000001546 ortholog_one2many 1 retrogene
retro_ttru_1654,
Vicugna pacos ENSVPAG00000000206 ortholog_one2many 2 retrogenes
retro_vpac_154, retro_vpac_319,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_528 56.12 52.34
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2. retro_cjac_833 68.35 90.23
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3. retro_cjac_1943 74.42 99.61
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4. retro_cjac_2270 79.71 53.52
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5. retro_cjac_2482 63.38 55.08
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6. retro_cjac_2747 91.44 100.00
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7. retro_cjac_2815 60.85 80.86
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8. retro_cjac_2854 96.97 89.84
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9. retro_cjac_3067 96.81 73.44
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Download FASTA sequences of all ENSCJAG00000013353 retrocopies