RetrogeneDB ID: | retro_itri_1219 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393405.1:24065..24586(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP5F1 | ||
Ensembl ID: | ENSSTOG00000007630 | ||
Aliases: | None | ||
Description: | ATP synthase, H+ transporting, mitochondrial Fo complex, subunit B1 [Source:HGNC Symbol;Acc:840] |
Percent Identity: | 66.48 % |
Parental protein coverage: | 68.65 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | VLQATRIFHTGQPRLAPLPPLPEYGGKVR-LGLIPEEFFQFLYPKTGVTGPYMLGTGLILYFLSKEIYVI |
V..A..IFHTGQP.LAPLPPLPEYG.KV..LGLIPEEFF.FLYPKTG.T.P.M.GT..IL.FL.KE.YV. | |
Retrocopy | VIAAIGIFHTGQPHLAPLPPLPEYGEKVC>LGLIPEEFF*FLYPKTGLTAPSMRGTRFIL-FLFKEVYVV |
Parental | TPETFSTISIVGLLVYVIKKYGASIGEFIDNLNEQK-IAQLEEVKQASIKQIQDAIELEKSQQA-LVQKR |
.PE.FSTISIVGLL.Y....Y.....E........K.I.QLEEVKQASIKQIQD.I.LEKSQ...LVQK. | |
Retrocopy | IPEPFSTISIVGLLLYXXXXYMVPLLENLLIISMSKIIVQLEEVKQASIKQIQDMI*LEKSQKV>LVQKC |
Parental | HYLFDVQRNNIAMALEVTYRERLHKVYKEVKNRLDY |
H..FDVQ.NNIA.ALEV.Y.E.LH.VYKE.K...DY | |
Retrocopy | HNFFDVQINNIATALEVAYQEWLHEVYKEAKSHPDY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |