RetrogeneDB ID: | retro_ggor_2622 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 7:116809052..116809697(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GTF3A | ||
Ensembl ID: | ENSGGOG00000008407 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 58.85 % |
Parental protein coverage: | 60. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 6 |
Parental | SAPTPPRPALPRRFICSFPD-CSANYSKAWKLDAHLCKHTGE-RPFVCDYEGCGKAFI-RDYHLSRHIL- |
S.P..P...L.RR.IC.FP..C...Y.KAWKL..HL..H.GE..PFV.D.EGCGK....RD.HLS.H.L. | |
Retrocopy | SLPLFPLHTLLRRVICYFPS<CGTTYKKAWKLNVHL*SH-GE>KPFVYDCEGCGKTHL>RD*HLSCHVL< |
Parental | THTGEKPFVCAANGCDQ-KFNTKSNLKKHFERKHENQQKQYI-CSFEDCKKTFKKHQQLKIHQCQHTNEP |
..T..KP.VCAA..CD..KFNTKSNLK.HF..KHENQ........F........KHQQLK.H.CQHTNEP | |
Retrocopy | DRTADKPYVCAASSCDL>KFNTKSNLKRHFTGKHENQXXXXXHMQFWRLEEDLYKHQQLKNHHCQHTNEP |
Parental | LFKCTQEGCGKHFASPSKLKRHAK-AHEGYVCQKGCSFVAKTWTELLKHVRETHKEEILCEVCRKTFKRK |
LF.CTQE.CGKHF.SPS.....A..AHEG..CQK.CSFV.K..TE.LKHVRET.K.E...E...KTFK.. | |
Retrocopy | LFNCTQERCGKHF-SPS-IQQAAR<AHEGSICQKACSFVVKA*TEVLKHVRETYKKETTYEAGQKTFKH- |
Parental | DYLKQHMKTHAPERDV |
.YLKQHM..HAPERD. | |
Retrocopy | -YLKQHMNIHAPERDI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 29 .25 RPM |
SRP007412_cerebellum | 0 .00 RPM | 28 .41 RPM |
SRP007412_heart | 0 .00 RPM | 14 .88 RPM |
SRP007412_kidney | 0 .00 RPM | 53 .32 RPM |
SRP007412_liver | 0 .00 RPM | 48 .32 RPM |
SRP007412_testis | 0 .00 RPM | 39 .78 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000019373 | 1 retrocopy | |
Equus caballus | ENSECAG00000014803 | 1 retrocopy | |
Felis catus | ENSFCAG00000006982 | 1 retrocopy | |
Gasterosteus aculeatus | ENSGACG00000003107 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000008407 | 1 retrocopy |
retro_ggor_2622 ,
|
Microcebus murinus | ENSMICG00000014763 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000009029 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000000331 | 2 retrocopies | |
Oreochromis niloticus | ENSONIG00000014134 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000004995 | 1 retrocopy |