RetrogeneDB ID:

retro_ggor_2622

Retrocopy
location
Organism:Gorilla (Gorilla gorilla)
Coordinates:7:116809052..116809697(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:GTF3A
Ensembl ID:ENSGGOG00000008407
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ggor_2622
TCCCTTCCCTTGTTCCCCCTTCACACACTTCTTAGGAGGGTCATCTGCTACTTCCCCAGTGTGGCACCACTTACAAAAAG
GCCTGGAAGCTTAATGTGCACCTGTAATCACATGGGGAAGAAACCATTTGTTTATGACTGTGAAGGGTGTGGCAAGACCC
ACCTCAAGAGACTAACATCTGAGTTGTCATGTCCTGATCGTACTGCAGACAAGCCATATGTTTGTGCAGCTAGTAGCTGT
GATCTAAAAATTCAACACAAAATCAAACTTGAAGAGACATTTTACAGGCAAACATGAAAACCAGCCAAAAAAAAAAATAC
ATATGCAATTTTGGAGGTTGGAAGAAGACCTTTACAAACATCAGCAGCTGAAAAACCATCACTGCCAGCATACCAATGAA
CCACTATTCAACTGTACCCAGGAAAGATGTGGGAAGCATTTTTCCCCATCCATCCAGCAAGCAGCAAGGCCCATGAGGGC
TCTATATGTCAAAAAGCGTGTTCTTTTGTGGTGAAAGCATGAACAGAAGTTTTGAAACATGTGAGAGAAACTTATAAAAA
GGAAACAACATATGAAGCAGGCCAGAAAACATTTAAACATTATCTTAAGCAACATATGAACATTCATGCCCCAGAAAGGG
ATATT

ORF - retro_ggor_2622 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 58.85 %
Parental protein coverage: 60. %
Number of stop codons detected: 3
Number of frameshifts detected 6


Retrocopy - Parental Gene Alignment:

ParentalSAPTPPRPALPRRFICSFPD-CSANYSKAWKLDAHLCKHTGE-RPFVCDYEGCGKAFI-RDYHLSRHIL-
S.P..P...L.RR.IC.FP..C...Y.KAWKL..HL..H.GE..PFV.D.EGCGK....RD.HLS.H.L.
RetrocopySLPLFPLHTLLRRVICYFPS<CGTTYKKAWKLNVHL*SH-GE>KPFVYDCEGCGKTHL>RD*HLSCHVL<
ParentalTHTGEKPFVCAANGCDQ-KFNTKSNLKKHFERKHENQQKQYI-CSFEDCKKTFKKHQQLKIHQCQHTNEP
..T..KP.VCAA..CD..KFNTKSNLK.HF..KHENQ........F........KHQQLK.H.CQHTNEP
RetrocopyDRTADKPYVCAASSCDL>KFNTKSNLKRHFTGKHENQXXXXXHMQFWRLEEDLYKHQQLKNHHCQHTNEP
ParentalLFKCTQEGCGKHFASPSKLKRHAK-AHEGYVCQKGCSFVAKTWTELLKHVRETHKEEILCEVCRKTFKRK
LF.CTQE.CGKHF.SPS.....A..AHEG..CQK.CSFV.K..TE.LKHVRET.K.E...E...KTFK..
RetrocopyLFNCTQERCGKHF-SPS-IQQAAR<AHEGSICQKACSFVVKA*TEVLKHVRETYKKETTYEAGQKTFKH-
ParentalDYLKQHMKTHAPERDV
.YLKQHM..HAPERD.
Retrocopy-YLKQHMNIHAPERDI

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .00 RPM 29 .25 RPM
SRP007412_cerebellum 0 .00 RPM 28 .41 RPM
SRP007412_heart 0 .00 RPM 14 .88 RPM
SRP007412_kidney 0 .00 RPM 53 .32 RPM
SRP007412_liver 0 .00 RPM 48 .32 RPM
SRP007412_testis 0 .00 RPM 39 .78 RPM
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_2622 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ggor_2622 has 0 orthologous retrocopies within eutheria group .


Parental genes homology:
Parental genes homology involve 10 parental genes, and 11 retrocopies.

Species Parental gene accession Retrocopies number
Callithrix jacchus ENSCJAG000000193731 retrocopy
Equus caballus ENSECAG000000148031 retrocopy
Felis catus ENSFCAG000000069821 retrocopy
Gasterosteus aculeatus ENSGACG000000031071 retrocopy
Gorilla gorilla ENSGGOG00000008407 1 retrocopy
retro_ggor_2622 ,
Microcebus murinus ENSMICG000000147631 retrocopy
Macaca mulatta ENSMMUG000000090291 retrocopy
Nomascus leucogenys ENSNLEG000000003312 retrocopies
Oreochromis niloticus ENSONIG000000141341 retrocopy
Vicugna pacos ENSVPAG000000049951 retrocopy



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