Parental gene:

GTF3A, ENSECAG00000014803

Aliases:None
Description:general transcription factor IIIA [Source:HGNC Symbol;Acc:4662]
Organism:Horse (Equus caballus)
Coordinates:17:7175169..7185124(+)


>ENSECAG00000014803
AGACCATTTGTCTGTGACCATGAAGGGTGTGGCAAAGCCTTTGTCAGGGACTACCATCTGAGCCGCCACATCCTGATTCA
CACTGGAGAAAAGCCATTTGTTTGTGCAGCTAGTGGCTGTGATCAAAAATTCAACACAAAGTCAAACTTGAGGAAACATT
TTGAGCGCAAACATGAAAATCAGCAGAAGCAGTATGTATGCAGTTTTGAAGGTTGTGAGAAGACCTTTAGGAAGCATCAG
CAGCTGAAAATCCATCAGTGCCAGCACACCAACGAACCGCTGTTTAAGTGTACCCATGAAGGATGTGGAAAGCACTTCGC
TTCTCCCAGCGGGCTCAAACGGCACGGGAAGGTCCATGAGGGTTATATATGTCAAAAAGAATGTTCCTTTGTGGCAAAAA
CATGGACAGACCTTCTGAAACATGTGAGAGAAGCCCATCAAGAGGAGATAAGATGTGAAGTATGCCAGAAAACATTTAAA
CGCAAAGATTATCTGAAGCAACATATGAAAACTCATGCCCCAGAGAGGGATGTGTGTCGATGTCCAAGAGAAGGCTGTGA
TAGAACCTACACAACTGTGTTTAATCTCCAGAGCCATATTCTCTCTTTTCATGAGGAAAGGCGCCCGTTTACATGTGAAC
ATGCTGGCTGTGGCAAGACGTTTGCAATGAAGCAAAGTCTCACTAGGCATGCCGTTGTGCATGACCCTGACAAGAAGAAA
ATGAAGCTCAAAGTAAAACCTTCTCGTGAAAAGCGGAGTTTGGCCTCTCGTCTCAGTGGATATATCCCTCCTAAAAAGAA
ACAAGAACAAGGCGTCTCTCTGCCGACAAACGGAGAGTCACTGCGCTGCCCTCCAGACCAGGTGCCCCTGACTGCCGCAG
TGCTCGCCCTCAGCCAGAGAGCAGCTTGCTTTGTTTAA

Library Parental gene expression (RPM)
SRP021940_synovial_membrane 29 .59 RPM
SRP021940_embryo 44 .09 RPM
SRP021940_cerebellum 31 .00 RPM
SRP021940_testis 103 .08 RPM
SRP021940_placental_villous 27 .09 RPM
SRP021940_articular_cartilage 13 .58 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000019373 ortholog_one2one 1 retrogene
retro_cjac_3066,
Equus caballus ENSECAG00000026954 within_species_paralog 2 retrogenes
retro_ecab_1064, retro_ecab_1107,
Felis catus ENSFCAG00000006982 ortholog_one2one 1 retrogene
retro_fcat_426,
Gasterosteus aculeatus ENSGACG00000003107 ortholog_one2many 1 retrogene
retro_gacu_6,
Gorilla gorilla ENSGGOG00000008407 ortholog_one2one 1 retrogene
retro_ggor_2622,
Microcebus murinus ENSMICG00000014763 ortholog_one2one 1 retrogene
retro_mmur_368,
Macaca mulatta ENSMMUG00000009029 ortholog_one2one 1 retrogene
retro_mmul_1632,
Nomascus leucogenys ENSNLEG00000000331 ortholog_one2one 2 retrogenes
retro_nleu_1134, retro_nleu_214,
Oreochromis niloticus ENSONIG00000014134 ortholog_one2many 1 retrogene
retro_onil_8,
Vicugna pacos ENSVPAG00000004995 ortholog_one2one 1 retrogene
retro_vpac_456,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_866 87.78 100.00
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Download FASTA sequences of all ENSECAG00000014803 retrocopies