RetrogeneDB ID: | retro_vpac_456 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | scaffold_21124:726..1222(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GTF3A | ||
Ensembl ID: | ENSVPAG00000004995 | ||
Aliases: | None | ||
Description: | general transcription factor IIIA [Source:HGNC Symbol;Acc:4662] |
Percent Identity: | 57.89 % |
Parental protein coverage: | 56.19 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | VCAASGCDQKFNTKSNLKKHFERKHENQQKQYVCRFEGCEKAFKKHQQLKSHQCQHTRE-PLFRCTHEGC |
.CAAS.C..K..TKSNL.KH...KHENQ.KQYV...EGCE..F.KH.QLK.HQ.Q...E..LFRCT..GC | |
Retrocopy | LCAASLCAHKCHTKSNLRKHLISKHENQPKQYVGSSEGCE-TFQKHLQLKIHQYQQNNE<ALFRCT-QGC |
Parental | GKHFSSPSSLK-RHGKVHEGYVCQKECSFVAKTWTELLKHMRETHKEEITCDVCQKTFKRRDYLKQHMKT |
GKH...P.....RH.K..E.YV.Q.ECSF.AKTWT..L...RETHK.E..CD...KTF....YL..HMKT | |
Retrocopy | GKHVTYPXXXPWRHPKIQEDYVFQRECSFAAKTWTKIL-NVRETHKAETICDTSGKTF*LEAYLRRHMKT |
Parental | HAPERDV-YRCPREGCGRTYTTVFNLQSHIL |
..P.RDV..RC..EGCGRT.T....LQS.IL | |
Retrocopy | QVPDRDV<SRCRTEGCGRTATAARSLQSRIL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000019373 | 1 retrocopy | |
Equus caballus | ENSECAG00000014803 | 1 retrocopy | |
Felis catus | ENSFCAG00000006982 | 1 retrocopy | |
Gasterosteus aculeatus | ENSGACG00000003107 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000008407 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000014763 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000009029 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000000331 | 2 retrocopies | |
Oreochromis niloticus | ENSONIG00000014134 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000004995 | 1 retrocopy |
retro_vpac_456 ,
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