RetrogeneDB ID: | retro_ggor_2643 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 8:4631631..4632889(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PAICS | ||
Ensembl ID: | ENSGGOG00000024392 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 88.94 % |
Parental protein coverage: | 99.28 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | VLNIGKKLYEGKTKEVYELLDSPGKVLLQSKDQITAGNAARKNHLEGKAAISNKITSCIFQLLQEAGIKT |
.LN.GKKLYEGKTKEVYELLDSPGKVLLQSKD.ITAGN.ARKNHLEGKAAISNKITSCIFQLL.EAGIKT | |
Retrocopy | ILNTGKKLYEGKTKEVYELLDSPGKVLLQSKDKITAGNVARKNHLEGKAAISNKITSCIFQLL*EAGIKT |
Parental | AFTRKCGETAFIAPQCEMIPIEWVCRRIATGSFLKRNPGVKEGYKF-YPPKVELFFKDDANNDPQWSEEQ |
.FTRKCGETAFIAP.CEMIPI.WVCRRIATGSFLKRNPGVKEGYKF.YP.KVELFFKDDANNDPQWSEEQ | |
Retrocopy | SFTRKCGETAFIAPHCEMIPIQWVCRRIATGSFLKRNPGVKEGYKF<YPLKVELFFKDDANNDPQWSEEQ |
Parental | LIAAKFCFAGLVIGQTEVDIMSHATQAVFEILEKSWLPQNCTLVDMKIEFGVDVTT-KEIVLADVIDNDS |
LIAAKFCFAGLVIGQTEVDI.SHATQA.FEILEKSWLPQNCTLVDMKIEFGVDVTT.KEIVLADVIDNDS | |
Retrocopy | LIAAKFCFAGLVIGQTEVDIRSHATQAIFEILEKSWLPQNCTLVDMKIEFGVDVTT<KEIVLADVIDNDS |
Parental | WRLWPSGDRSQQKDKQSYRDLKEVTPEGLQMVKKNFEWVAERVELLLKSE----IVVLMSSTSDLGHCEN |
WRLWPSGDRSQQKDKQSY.DLKEVTPEGLQMVKKNFEWVAERVELLLKSE.....VVLM.STSDLGHCE. | |
Retrocopy | WRLWPSGDRSQQKDKQSYQDLKEVTPEGLQMVKKNFEWVAERVELLLKSESQCRVVVLMGSTSDLGHCEK |
Parental | I-KACRNVGTPCEL---STHRGPNETLKIKAACEGDGIPTVFVAVAGRSNGLGPVMSGNTAYPVISCPPL |
I.KAC.N.G.PCEL.....H.GP.ETL.IKA..EGDGIPTVFVAVAGRSN.LGPVM.GNTAYP...CPPL | |
Retrocopy | IKKACGNFGIPCEL*VTFVHKGPDETLRIKAEYEGDGIPTVFVAVAGRSNSLGPVMYGNTAYPGSGCPPL |
Parental | TPDWGAQDVWSSLRLPSEPIGLGCSTILSPEGSAQFAAQIFGLSNHLVWSKLRASILNTWISLKQADKKI |
TPDWGAQDVWSSLRLPS...GLGCSTILS.EGSAQFAAQIFGL..HLVWSKL.ASILNTWISLKQADKKI | |
Retrocopy | TPDWGAQDVWSSLRLPS---GLGCSTILSQEGSAQFAAQIFGLNDHLVWSKL*ASILNTWISLKQADKKI |
Parental | RECNL |
RECNL | |
Retrocopy | RECNL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 5 .04 RPM | 10 .12 RPM |
SRP007412_cerebellum | 4 .89 RPM | 11 .15 RPM |
SRP007412_heart | 0 .97 RPM | 1 .19 RPM |
SRP007412_kidney | 4 .33 RPM | 14 .11 RPM |
SRP007412_liver | 4 .35 RPM | 13 .64 RPM |
SRP007412_testis | 7 .15 RPM | 26 .21 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3927 |
Pan troglodytes | retro_ptro_2670 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000010577 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000010749 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000013413 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000015242 | 2 retrocopies | |
Homo sapiens | ENSG00000128050 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000024392 | 1 retrocopy |
retro_ggor_2643 ,
|
Mus musculus | ENSMUSG00000029247 | 6 retrocopies | |
Nomascus leucogenys | ENSNLEG00000008786 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000003575 | 2 retrocopies | |
Procavia capensis | ENSPCAG00000008531 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000016081 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000002101 | 3 retrocopies | |
Tupaia belangeri | ENSTBEG00000006751 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000010497 | 2 retrocopies | |
Drosophila melanogaster | FBgn0020513 | 1 retrocopy |