RetrogeneDB ID: | retro_hsap_3915 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 7:143242274..143243398(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000229877 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PAICS | ||
Ensembl ID: | ENSG00000128050 | ||
Aliases: | PAICS, ADE2, ADE2H1, AIRC, PAIS | ||
Description: | phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase [Source:HGNC Symbol;Acc:8587] |
Percent Identity: | 76.72 % |
Parental protein coverage: | 87.76 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 4 |
Parental | KAAISN-KITSCIFQLLQEAGIKTAFTRKCG-ETAFIAPQCEMIPIEWVCRRIATGSFLKRNPGVKEGYK |
KAAISN.K.....F........K.......G..TAF.AP.CEMIP.EWVCRRIAT.SF.KRNP..KEGYK | |
Retrocopy | KAAISN>KLPVVFFSCYRKQVSKLLSPENVGKQTAFAAPECEMIPTEWVCRRIATDSFFKRNPDDKEGYK |
Parental | FYPPKVELFFKDDANNDPQWSEEQLIAAKFCFAGLLIGQTEVDIMSHATQAIF-EILEKSWLPQNCTLVD |
FYPPKVE.FFKDDA.NDP..SEEQLIA.KFCF..LLIGQTEVDIMS..T.A.F.EILEKSWLPQNC.LVD | |
Retrocopy | FYPPKVEMFFKDDASNDPESSEEQLIAPKFCFGELLIGQTEVDIMSYTT*ALF>EILEKSWLPQNCMLVD |
Parental | MKIEFGVDVTTKEIVLADVIDNDSWRLWPSGDRSQQKDKQSYRDLKEVTPEGLQMVK-KNFEWVAERVEL |
MKI.FGVDVT.KEIVLADVIDNDSWRLWPS.D.SQQKDKQ...DLKEVTPEGL.MV..KN.EWVAER.EL | |
Retrocopy | MKIKFGVDVTPKEIVLADVIDNDSWRLWPSVDGSQQKDKQPHQDLKEVTPEGLKMVI>KNLEWVAEREEL |
Parental | LLKSESQCRVVVLMGSTSDLGHCEKIKKACGNFGIPCELRVTSAHKGPDETLRIKAEYEGDGIPTVFVAV |
LLK.ES.C...VL.GSTSDLGHCEKIKKACGN.GI..EL.VTS.HKGPD.TLRIK.E.EGDGIPTVFVAV | |
Retrocopy | LLKLESPCGMAVLVGSTSDLGHCEKIKKACGNLGIS*ELQVTSVHKGPDKTLRIKGECEGDGIPTVFVAV |
Parental | AGRSNGLGPVMSGNTAYPVISCPPL-TPDWGVQDVWSSLRLPSGLGCSTVLSPEGSAQFAAQIFGLSNHL |
AGR.NGLGPV.SGNTAYPVISCPPL...DWG.QDVWSS.RLPSGL.CST.LSPEGSAQFAAQIFGL.NHL | |
Retrocopy | AGRRNGLGPVTSGNTAYPVISCPPL<QADWGAQDVWSSPRLPSGLSCSTTLSPEGSAQFAAQIFGLNNHL |
Parental | VWSKLRASILNTWISLKQADKKIRECNL |
.W..L.AS.LNTWI.LKQ.DK.IRE.NL | |
Retrocopy | LWGRL*ASVLNTWIFLKQVDKEIRERNL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 39 .04 RPM |
bodymap2_adrenal | 0 .12 RPM | 67 .77 RPM |
bodymap2_brain | 0 .00 RPM | 66 .24 RPM |
bodymap2_breast | 0 .06 RPM | 43 .09 RPM |
bodymap2_colon | 0 .00 RPM | 64 .76 RPM |
bodymap2_heart | 0 .00 RPM | 25 .55 RPM |
bodymap2_kidney | 0 .00 RPM | 85 .35 RPM |
bodymap2_liver | 0 .00 RPM | 99 .70 RPM |
bodymap2_lung | 0 .00 RPM | 38 .77 RPM |
bodymap2_lymph_node | 0 .00 RPM | 51 .88 RPM |
bodymap2_ovary | 0 .02 RPM | 92 .41 RPM |
bodymap2_prostate | 0 .00 RPM | 65 .82 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 42 .56 RPM |
bodymap2_testis | 0 .00 RPM | 78 .96 RPM |
bodymap2_thyroid | 0 .00 RPM | 59 .53 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 32 .98 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3802 |
Pan troglodytes | retro_ptro_2662 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000010577 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000010749 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000013413 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000015242 | 2 retrocopies | |
Homo sapiens | ENSG00000128050 | 3 retrocopies |
retro_hsap_3802, retro_hsap_3915 , retro_hsap_3927,
|
Gorilla gorilla | ENSGGOG00000024392 | 1 retrocopy | |
Mus musculus | ENSMUSG00000029247 | 6 retrocopies | |
Nomascus leucogenys | ENSNLEG00000008786 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000003575 | 2 retrocopies | |
Procavia capensis | ENSPCAG00000008531 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000016081 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000002101 | 3 retrocopies | |
Tupaia belangeri | ENSTBEG00000006751 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000010497 | 2 retrocopies | |
Drosophila melanogaster | FBgn0020513 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .02 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .02 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .02 RPM |
FIN_HG00338 | 0 .02 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .03 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .03 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .03 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .03 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |