RetrogeneDB ID: | retro_ggor_593 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 10:88062642..88063094(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SPA17 | ||
Ensembl ID: | ENSGGOG00000003757 | ||
Aliases: | None | ||
Description: | Sperm surface protein Sp17 [Source:UniProtKB/TrEMBL;Acc:G3QMF2] |
Percent Identity: | 78.29 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MSIPFSNTHYRIPQGFGNLLEGLTREILREQPDNIP-AFAAAYFESLLEKREKTNFDPAEWGSKVEDRFY |
MSIPFSNTHY.I.QGFG.LL..LT.EILREQPDNI..AF.AAYF.S..EKREKT.FDPAEWG..VED.F. | |
Retrocopy | MSIPFSNTHY*ILQGFGSLLKELTHEILREQPDNIQ<AFSAAYFDSFPEKREKTTFDPAEWGTQVEDCF* |
Parental | NSHAFEEQEPPEKSDPKQEESQISGKEEETSVTILDSSEEDKEKEEVAAVKIQAAFRGHIAREEAKKMKT |
NSHAFEEQEPPEK.DPKQE.S.ISGKEEET.VTILDSSEEDKEKEEVAAVKIQAAF.GH.AR.E.K.M.T | |
Retrocopy | NSHAFEEQEPPEKCDPKQENSPISGKEEETPVTILDSSEEDKEKEEVAAVKIQAAFWGHTARQEVKRMET |
Parental | NSFQNEEREENK |
.S...EE.EE.K | |
Retrocopy | DSLRHEETEEYK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .05 RPM | 0 .67 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP007412_heart | 0 .00 RPM | 0 .22 RPM |
SRP007412_kidney | 0 .08 RPM | 1 .51 RPM |
SRP007412_liver | 0 .00 RPM | 0 .13 RPM |
SRP007412_testis | 0 .00 RPM | 144 .63 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_696 |
Pan troglodytes | retro_ptro_500 |
Pongo abelii | retro_pabe_529 |
Macaca mulatta | retro_mmul_2405 |
Callithrix jacchus | retro_cjac_978 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000007961 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000007789 | 1 retrocopy | |
Homo sapiens | ENSG00000064199 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000003757 | 1 retrocopy |
retro_ggor_593 ,
|
Macaca mulatta | ENSMMUG00000008480 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000007436 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000004017 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000004426 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000008379 | 1 retrocopy |