RetrogeneDB ID: | retro_hsap_696 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 10:77142150..77142602(-) | ||
Located in intron of: | ENSG00000270087 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000236797 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SPA17 | ||
Ensembl ID: | ENSG00000064199 | ||
Aliases: | SPA17, CT22, SP17, SP17-1 | ||
Description: | sperm autoantigenic protein 17 [Source:HGNC Symbol;Acc:11210] |
Percent Identity: | 78.95 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MSIPFSNTHYRIPQGFGNLLEGLTREILREQPDNIP-AFAAAYFESLLEKREKTNFDPAEWGSKVEDRFY |
MSIPFSNTHY.I.QGFG.LL..LT.EILREQPDNI..AFAAAYF.S..EKREKT.FDPAEWG..VED.F. | |
Retrocopy | MSIPFSNTHY*ILQGFGSLLKELTHEILREQPDNIQ<AFAAAYFDSFPEKREKTTFDPAEWGTQVEDCF* |
Parental | NNHAFEEQEPPEKSDPKQEESQISGKEEETSVTILDSSEEDKEKEEVAAVKIQAAFRGHIAREEAKKMKT |
N.HAFEEQEPPEK.DPKQE.S.ISGKE.ET.VTILDSSEEDKEKEEVAAVKIQAAF.GH.AREE.K.M.T | |
Retrocopy | NSHAFEEQEPPEKCDPKQENSPISGKEKETPVTILDSSEEDKEKEEVAAVKIQAAFWGHTAREEVKRMET |
Parental | NSLQNEEKEENK |
.SL..EE.EE.K | |
Retrocopy | DSLRHEETEEYK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 2 .25 RPM |
bodymap2_adrenal | 0 .25 RPM | 4 .28 RPM |
bodymap2_brain | 0 .09 RPM | 9 .09 RPM |
bodymap2_breast | 0 .29 RPM | 2 .45 RPM |
bodymap2_colon | 0 .00 RPM | 4 .33 RPM |
bodymap2_heart | 0 .00 RPM | 1 .38 RPM |
bodymap2_kidney | 0 .14 RPM | 6 .84 RPM |
bodymap2_liver | 0 .00 RPM | 0 .87 RPM |
bodymap2_lung | 0 .04 RPM | 11 .92 RPM |
bodymap2_lymph_node | 0 .00 RPM | 2 .50 RPM |
bodymap2_ovary | 0 .39 RPM | 11 .82 RPM |
bodymap2_prostate | 0 .00 RPM | 2 .06 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 0 .55 RPM |
bodymap2_testis | 0 .08 RPM | 147 .70 RPM |
bodymap2_thyroid | 0 .04 RPM | 10 .36 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 0 .93 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_500 |
Gorilla gorilla | retro_ggor_593 |
Pongo abelii | retro_pabe_529 |
Macaca mulatta | retro_mmul_2405 |
Callithrix jacchus | retro_cjac_978 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000007961 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000007789 | 1 retrocopy | |
Homo sapiens | ENSG00000064199 | 1 retrocopy |
retro_hsap_696 ,
|
Gorilla gorilla | ENSGGOG00000003757 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000008480 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000007436 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000004017 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000004426 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000008379 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |