RetrogeneDB ID:

retro_ggor_871

Retrocopy
location
Organism:Gorilla (Gorilla gorilla)
Coordinates:12:46755393..46755745(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:C20ORF27
Ensembl ID:ENSGGOG00000016987
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ggor_871
TTCCTGAAGATCCTGCACAGGTATGAGATTACCTTTGCTCCGCCCCAGTGCACAGGCTGAGCAAGGACGTCCGCCAGGCA
CTTGTCCCCAGCCTGCACCTGAAGCTTCTCAGCGTCCTACCCTTCCCTGAAGGTTATATTGTCAAGTGCGAGTACTAGGC
GCACAAAGAAGGGGTCCTCAAAGAGGGGATGCTACTAGTCTGGGAAGGTGGCACCAGCACCTGCGTGCGTGGGAGGTGCA
AGCCTGCATCATGGGCTGACGCCATGGCACGTGCATGCTGCTGGACGGTGTCAAATGTGTGGGTGCCAAGCTGGAATACC
ACTCGGAGCACAGCGACTGGCATGGCTTTGAC

ORF - retro_ggor_871 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 79.17 %
Parental protein coverage: 67.82 %
Number of stop codons detected: 2
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalFLKILHRYEITFTLP-PVHRLSKDVREAPVPSLHLKLLSVVPVPEGYSVKCEYSAHKEGVLKEEILLACE
FLKILHRYEITF..P.PVHRLSKDVR.A.VPSLHLKLLSV.P.PEGY.VKCEY.AHKEGVLKE..LL..E
RetrocopyFLKILHRYEITFAPP<PVHRLSKDVRQALVPSLHLKLLSVLPFPEGYIVKCEY*AHKEGVLKEGMLLVWE
ParentalGGTGTCVR-VTVQARVMDRHHGTPMLLDGVKCVGAELEYDSEHSDWHGFD
GGT.TCVR...VQA..M...HGT.MLLDGVKCVGA.LEY.SEHSDWHGFD
RetrocopyGGTSTCVR<WEVQACIMG*RHGTCMLLDGVKCVGAKLEYHSEHSDWHGFD

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .00 RPM 17 .98 RPM
SRP007412_cerebellum 0 .04 RPM 13 .79 RPM
SRP007412_heart 0 .00 RPM 4 .00 RPM
SRP007412_kidney 0 .00 RPM 6 .54 RPM
SRP007412_liver 0 .00 RPM 5 .94 RPM
SRP007412_testis 0 .00 RPM 28 .39 RPM
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_871 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ggor_871 has 0 orthologous retrocopies within eutheria group .


Parental genes homology:
Parental genes homology involve 7 parental genes, and 9 retrocopies.

Species Parental gene accession Retrocopies number
Callithrix jacchus ENSCJAG000000211941 retrocopy
Homo sapiens ENSG000001012202 retrocopies
Gorilla gorilla ENSGGOG00000016987 1 retrocopy
retro_ggor_871 ,
Macaca mulatta ENSMMUG000000220791 retrocopy
Nomascus leucogenys ENSNLEG000000076531 retrocopy
Pongo abelii ENSPPYG000000108131 retrocopy
Pan troglodytes ENSPTRG000000132042 retrocopies



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