RetrogeneDB ID: | retro_ggor_871 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 12:46755393..46755745(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | C20ORF27 | ||
Ensembl ID: | ENSGGOG00000016987 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 79.17 % |
Parental protein coverage: | 67.82 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | FLKILHRYEITFTLP-PVHRLSKDVREAPVPSLHLKLLSVVPVPEGYSVKCEYSAHKEGVLKEEILLACE |
FLKILHRYEITF..P.PVHRLSKDVR.A.VPSLHLKLLSV.P.PEGY.VKCEY.AHKEGVLKE..LL..E | |
Retrocopy | FLKILHRYEITFAPP<PVHRLSKDVRQALVPSLHLKLLSVLPFPEGYIVKCEY*AHKEGVLKEGMLLVWE |
Parental | GGTGTCVR-VTVQARVMDRHHGTPMLLDGVKCVGAELEYDSEHSDWHGFD |
GGT.TCVR...VQA..M...HGT.MLLDGVKCVGA.LEY.SEHSDWHGFD | |
Retrocopy | GGTSTCVR<WEVQACIMG*RHGTCMLLDGVKCVGAKLEYHSEHSDWHGFD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 17 .98 RPM |
SRP007412_cerebellum | 0 .04 RPM | 13 .79 RPM |
SRP007412_heart | 0 .00 RPM | 4 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 6 .54 RPM |
SRP007412_liver | 0 .00 RPM | 5 .94 RPM |
SRP007412_testis | 0 .00 RPM | 28 .39 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000021194 | 1 retrocopy | |
Homo sapiens | ENSG00000101220 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000016987 | 1 retrocopy |
retro_ggor_871 ,
|
Macaca mulatta | ENSMMUG00000022079 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000007653 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000010813 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000013204 | 2 retrocopies |