RetrogeneDB ID: | retro_hsap_1748 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 17:33517979..33518721(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000267744 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SPIC | ||
Ensembl ID: | ENSG00000166211 | ||
Aliases: | SPIC, SPI-C | ||
Description: | Spi-C transcription factor (Spi-1/PU.1 related) [Source:HGNC Symbol;Acc:29549] |
Percent Identity: | 89.16 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MTCVEQDKLGQAFEDAFEVLRQHSTGDLQYSPDYRNYLALINHRPHVKGNSSCYGVLPTEEPVYNWRTVI |
MTCVEQDKLGQAFEDAFE.LRQHSTGDL.YSPDY.NYLALIN..PHVKGNSSCYGVLPTEEP..NWRTVI | |
Retrocopy | MTCVEQDKLGQAFEDAFEALRQHSTGDL*YSPDYKNYLALINYCPHVKGNSSCYGVLPTEEPLCNWRTVI |
Parental | NSAADFYFEGNIHQSLQNITENQLVQPTLLQQKGGKGRKKLRLFEYLHESLYNPEMASCIQWVDKTKGIF |
NSAADFYFEGNIHQSLQNITENQLVQPT.LQQK.GKGRKKLRLFEYLHESL.NPEMA.CIQWVDK.KGIF | |
Retrocopy | NSAADFYFEGNIHQSLQNITENQLVQPTILQQKWGKGRKKLRLFEYLHESLCNPEMAPCIQWVDKIKGIF |
Parental | QFVSKNKEKLAELWGKRKGNRKTMTYQKMARALRNYGRSGEITKIRRKLTYQFSEAILQRLSPSYFL-GK |
.FVSKNK.KLAELW.KRKG..KTMTYQKMARALRNYGRS.EITKIRRKLTYQFS.A.LQRLSPSYFL.GK | |
Retrocopy | PFVSKNKGKLAELWRKRKGRWKTMTYQKMARALRNYGRSEEITKIRRKLTYQFS*ATLQRLSPSYFL>GK |
Parental | EIFYSQCVQPDQEYLSLNNWNANYNYTYANYHELNHHDC |
..F...CV.PDQEYLSLNNWNANYNYTYANYHELNHHDC | |
Retrocopy | RSF-PKCVKPDQEYLSLNNWNANYNYTYANYHELNHHDC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 0 .00 RPM |
bodymap2_adrenal | 0 .10 RPM | 7 .08 RPM |
bodymap2_brain | 0 .00 RPM | 0 .00 RPM |
bodymap2_breast | 0 .00 RPM | 0 .00 RPM |
bodymap2_colon | 0 .00 RPM | 0 .00 RPM |
bodymap2_heart | 0 .61 RPM | 0 .00 RPM |
bodymap2_kidney | 0 .00 RPM | 0 .00 RPM |
bodymap2_liver | 0 .00 RPM | 0 .85 RPM |
bodymap2_lung | 0 .05 RPM | 0 .00 RPM |
bodymap2_lymph_node | 0 .07 RPM | 1 .63 RPM |
bodymap2_ovary | 0 .00 RPM | 0 .00 RPM |
bodymap2_prostate | 0 .00 RPM | 0 .00 RPM |
bodymap2_skeletal_muscle | 1 .53 RPM | 0 .00 RPM |
bodymap2_testis | 0 .26 RPM | 0 .06 RPM |
bodymap2_thyroid | 0 .26 RPM | 0 .06 RPM |
bodymap2_white_blood_cells | 0 .85 RPM | 0 .00 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_1218 |
Gorilla gorilla | retro_ggor_2255 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000009904 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000001906 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000004496 | 1 retrocopy | |
Equus caballus | ENSECAG00000009614 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000004217 | 6 retrocopies | |
Homo sapiens | ENSG00000166211 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000024597 | 4 retrocopies | |
Loxodonta africana | ENSLAFG00000015661 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000011052 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000020873 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000008070 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000015148 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000004873 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000005351 | 4 retrocopies | |
Rattus norvegicus | ENSRNOG00000005720 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000015457 | 3 retrocopies | |
Tursiops truncatus | ENSTTRG00000017205 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .03 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .08 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .02 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .03 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |