RetrogeneDB ID: | retro_ptro_3070 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | GL393514.1:16216..16726(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SPIC | ||
Ensembl ID: | ENSPTRG00000005351 | ||
Aliases: | None | ||
Description: | Spi-C transcription factor (Spi-1/PU.1 related) [Source:HGNC Symbol;Acc:29549] |
Percent Identity: | 70.39 % |
Parental protein coverage: | 69.76 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 6 |
Parental | MTCVEQDKLGQAFEDAFEVLRQHSTGDLQYSPDYRNYLALINHRPHVKGNSSCYG-VLPTEEPVYNWRTV |
MT..EQDKLGQAFEDAFEVLRQH.T.D.Q.SPD..NY...IN...H..GNSSCY..VLPTEEPVYN.RTV | |
Retrocopy | MTWIEQDKLGQAFEDAFEVLRQHPTLDPQNSPDDKNYVSFINCCLHIRGNSSCYE<VLPTEEPVYN*RTV |
Parental | I-NSAADFYFEGNIHQSLQNITENQLVQPTVLQQ-KGGKGRKKLRL-FEYLHESLYNPEMASCIQWVDKT |
I.....DFYFEGNIHQ.LQ.ITENQLVQP..LQQ..G.KGRKKL.L..EYLH.SL.N.EMASCI.W.DKT | |
Retrocopy | I<SRTVDFYFEGNIHQPLQSITENQLVQPALLQQ<RGRKGRKKLWL<IEYLHKSLCNSEMASCIHWEDKT |
Parental | KGIFQFVSKNKEKLAELWGKRKGNR-KTMTYQK-MARAL |
K..FQFV.K..E...ELWGKRK..R..TMT.QK.MARAL | |
Retrocopy | KDTFQFVTKTQE-TSELWGKRKSTR<STMTFQK<MARAL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .05 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP007412_heart | 0 .03 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .05 RPM | 0 .10 RPM |
SRP007412_liver | 0 .07 RPM | 0 .43 RPM |
SRP007412_testis | 0 .11 RPM | 0 .11 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000009904 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000001906 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000004496 | 1 retrocopy | |
Equus caballus | ENSECAG00000009614 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000004217 | 6 retrocopies | |
Homo sapiens | ENSG00000166211 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000024597 | 4 retrocopies | |
Loxodonta africana | ENSLAFG00000015661 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000011052 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000020873 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000008070 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000015148 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000004873 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000005351 | 4 retrocopies | |
Rattus norvegicus | ENSRNOG00000005720 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000015457 | 3 retrocopies | |
Tursiops truncatus | ENSTTRG00000017205 | 1 retrocopy |