RetrogeneDB ID: | retro_hsap_2661 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 3:72136415..72136880(+) | ||
Located in intron of: | ENSG00000241163 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000242609 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CCDC137 | ||
Ensembl ID: | ENSG00000185298 | ||
Aliases: | None | ||
Description: | coiled-coil domain containing 137 [Source:HGNC Symbol;Acc:33451] |
Percent Identity: | 78.48 % |
Parental protein coverage: | 53.98 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | QHVLFLSKNQAIRQPEVQAAPKEKSEQKKAKKAFQKRRLDKVRRKKEEKAADRLEQELLRDTVKFGEVVL |
QH.LFLSKNQA..QPEVQAAPKEKSE.......FQKRRLDKV..KKEEK.ADRLEQELLRD.VKFGEVVL | |
Retrocopy | QHMLFLSKNQATQQPEVQAAPKEKSELXXXXXVFQKRRLDKVWQKKEEKMADRLEQELLRDAVKFGEVVL |
Parental | QPPELTARPQRSVSKDQPGRRSQMLRMLLSPGGVSQPLTASLARQRIVEEERERAVQAYRA-LKQRQQQL |
Q.PELT.RP.RSVSKDQPGRRSQMLRMLLSP.GV.QPLTASLA.QRIV.EERE.A.QAYR..LKQ.Q..L | |
Retrocopy | QHPELTTRPRRSVSKDQPGRRSQMLRMLLSPRGVFQPLTASLAYQRIVGEEREWAMQAYRC<LKQ-QWRL |
Parental | HGE-RPHLTSRKKPEPQL |
HGE..P..TS.K.PEPQL | |
Retrocopy | HGE>EPLPTSKKEPEPQL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 7 .57 RPM |
bodymap2_adrenal | 0 .00 RPM | 19 .51 RPM |
bodymap2_brain | 0 .00 RPM | 5 .06 RPM |
bodymap2_breast | 0 .00 RPM | 8 .13 RPM |
bodymap2_colon | 0 .00 RPM | 7 .54 RPM |
bodymap2_heart | 0 .00 RPM | 2 .55 RPM |
bodymap2_kidney | 0 .00 RPM | 10 .92 RPM |
bodymap2_liver | 0 .00 RPM | 7 .41 RPM |
bodymap2_lung | 0 .00 RPM | 4 .66 RPM |
bodymap2_lymph_node | 0 .00 RPM | 13 .30 RPM |
bodymap2_ovary | 0 .00 RPM | 8 .75 RPM |
bodymap2_prostate | 0 .00 RPM | 12 .19 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 5 .04 RPM |
bodymap2_testis | 0 .00 RPM | 11 .33 RPM |
bodymap2_thyroid | 0 .00 RPM | 9 .74 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 9 .00 RPM |
ENCODE library ID | Target | ChIP-Seq Peak coordinates |
---|---|---|
ENCFF002CMI | POLR2A | 3:72135567..72135845 |
ENCFF002CXR | POLR2A | 3:72135496..72135932 |
ENCFF002DBE | POLR2A | 3:72135441..72135937 |
Species | RetrogeneDB ID |
---|---|
Gorilla gorilla | retro_ggor_1857 |
Pongo abelii | retro_pabe_2312 |
Macaca mulatta | retro_mmul_1511 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Erinaceus europaeus | ENSEEUG00000014878 | 1 retrocopy | |
Homo sapiens | ENSG00000185298 | 1 retrocopy |
retro_hsap_2661 ,
|
Gorilla gorilla | ENSGGOG00000009333 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000008831 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000002713 | 1 retrocopy | |
Mus musculus | ENSMUSG00000049957 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000013830 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000008741 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000009767 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000048712 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .06 RPM |
CEU_NA11930 | 0 .10 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .02 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .06 RPM |
FIN_HG00183 | 0 .03 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .03 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .05 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .06 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .03 RPM |
FIN_HG00378 | 0 .06 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .03 RPM |
GBR_HG00119 | 0 .07 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .03 RPM |
TSI_NA20512 | 0 .03 RPM |
TSI_NA20513 | 0 .02 RPM |
TSI_NA20518 | 0 .03 RPM |
TSI_NA20532 | 0 .03 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .06 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .03 RPM |
YRI_NA19114 | 0 .03 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .07 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .02 RPM |