RetrogeneDB ID:

retro_nleu_1264

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397286.1:20758650..20759127(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSNLEG00000015174
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:CCDC137
Ensembl ID:ENSNLEG00000013830
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_1264
TCCCGGCGTGGAGATGGCGCGAGCTGGTCACTGAGCAGCGGTGCCCAGGGTGCAGGCAGGTCCTGGGAGTCCCCGGCAGC
AAGCGCAGCCGCTGGAGAAGCAGCGCCCAGCCCCGTGGCCCGGGCTTCGCAGCGAAGAGAAGAAGAAAGTGAACTGCAAG
CCCAAGAACCAGGACGAACAGGAGATCCCTTTCCGGCTCCAGGAGATTATGAGGAGCCGCCAGGAGATGAAAAACCCGAT
CAGTAACAAGAAAAGGAAGAAAGCAGCCCAGGTGACCTTCAGAAAGACATTGGAGAAGGAAGCAAAGGGAGCGGAGCCTG
ACATCGCCGTCCCCAAGTTCAAACAGAGGAAGGGGAGTCCGACGGGGCCTATATCCAGCGCATGCAGCAAGAGGCCCAGC
ACTTGCTATTCCTCAGCAAGAACCAGGCCATCCGGCAGCCAGAGGTGCAGGCAGCTCCCAAGGAGAAGTCTGAGCAG

ORF - retro_nleu_1264 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 83.23 %
Parental protein coverage: 55.02 %
Number of stop codons detected: 0
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalARAGQGAAVPRVQAGPGSPRR-ARRRQQVQPLGKQRPAPWPGLRSKEKKKVNCKPKNQDEQEIPFRLREI
.R.G.GA.........G..R.....RQQ.QPL.KQRPAPWPGLRS.EKKKVNCKPKNQDEQEIPFRL.EI
RetrocopySRRGDGASWSLSSGAQGAGRS>GSPRQQAQPLEKQRPAPWPGLRSEEKKKVNCKPKNQDEQEIPFRLQEI
ParentalMRSRQEMKNPISNKKRKKAAQVTFRKTLEKEAKGAEPDIAIPKFKQRK-GESDGAYIQRMQQEAQHVLFL
MRSRQEMKNPISNKKRKKAAQVTFRKTLEKEAKGAEPDIA.PKFKQRK.GESDGAYIQRMQQEAQH.LFL
RetrocopyMRSRQEMKNPISNKKRKKAAQVTFRKTLEKEAKGAEPDIAVPKFKQRK<GESDGAYIQRMQQEAQHLLFL
ParentalSKNQAIRQPEMQAAPKEKSEQ
SKNQAIRQPE.QAAPKEKSEQ
RetrocopySKNQAIRQPEVQAAPKEKSEQ

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_1264 was not experimentally validated.

Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 10 parental genes, and 12 retrocopies.

Species Parental gene accession Retrocopies number
Erinaceus europaeus ENSEEUG000000148781 retrocopy
Homo sapiens ENSG000001852981 retrocopy
Gorilla gorilla ENSGGOG000000093331 retrocopy
Macaca mulatta ENSMMUG000000088311 retrocopy
Monodelphis domestica ENSMODG000000027131 retrocopy
Mus musculus ENSMUSG000000499571 retrocopy
Nomascus leucogenys ENSNLEG00000013830 3 retrocopies
retro_nleu_1264 , retro_nleu_1530, retro_nleu_586,
Pongo abelii ENSPPYG000000087411 retrocopy
Pan troglodytes ENSPTRG000000097671 retrocopy
Rattus norvegicus ENSRNOG000000487121 retrocopy



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