RetrogeneDB ID: | retro_mmus_641 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 10:44169599..44170302(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ccdc137 | ||
Ensembl ID: | ENSMUSG00000049957 | ||
Aliases: | Ccdc137, 3110023B02Rik | ||
Description: | coiled-coil domain containing 137 [Source:MGI Symbol;Acc:MGI:1914541] |
Percent Identity: | 93.25 % |
Parental protein coverage: | 81.38 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | GQRSKEKKKVNCKPKNQDEQEIPFRLREIMRSRQEMKKTLSNKKRKK-EAQVAFKKTLEKEAKGEEPDIA |
GQ..KEKKKVNCKPKNQ.EQEIPFRL.EIMRSRQE.KKTLSNKKRKK.EAQVAFKKTLEKE.KGEEPDIA | |
Retrocopy | GQQRKEKKKVNCKPKNQNEQEIPFRL*EIMRSRQERKKTLSNKKRKK>EAQVAFKKTLEKEVKGEEPDIA |
Parental | VPKFKQRKGESDVAYVQRMEQEAQHVLFLSKNQAPRQPEVQAAPKKEKSERKKAFQKRRLEKAQRKREAR |
VPKFKQRKGESDVAYV..MEQEAQHVLFLSKNQAPRQPEVQ.APK..KSERKKAFQKRRLEKAQRKREAR | |
Retrocopy | VPKFKQRKGESDVAYVPCMEQEAQHVLFLSKNQAPRQPEVQSAPK--KSERKKAFQKRRLEKAQRKREAR |
Parental | AVDRLEQELLKDTVKFGEVVLQPPELTVQPRRSTSRDAPGKKSLMLKKMLLGPGGGSPAPATSLARQRIL |
AVDRLEQELLKDTVKFGEVVLQPPELTVQPRRSTSRDAPGKKSLMLKKMLLGPGGGSPA.ATSLARQ.IL | |
Retrocopy | AVDRLEQELLKDTVKFGEVVLQPPELTVQPRRSTSRDAPGKKSLMLKKMLLGPGGGSPALATSLARQQIL |
Parental | GEERERAVQAYRALKKLHRQEMTPAQP |
GEERERAV.AYRALKKL.RQEMTPAQP | |
Retrocopy | GEERERAV*AYRALKKLLRQEMTPAQP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 20 .79 RPM |
SRP007412_cerebellum | 0 .00 RPM | 19 .32 RPM |
SRP007412_heart | 0 .00 RPM | 6 .69 RPM |
SRP007412_kidney | 0 .00 RPM | 14 .96 RPM |
SRP007412_liver | 0 .00 RPM | 9 .86 RPM |
SRP007412_testis | 6 .22 RPM | 7 .91 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_3458 | 1064 libraries | 5 libraries | 0 libraries | 1 library | 2 libraries |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Erinaceus europaeus | ENSEEUG00000014878 | 1 retrocopy | |
Homo sapiens | ENSG00000185298 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000009333 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000008831 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000002713 | 1 retrocopy | |
Mus musculus | ENSMUSG00000049957 | 1 retrocopy |
retro_mmus_641 ,
|
Nomascus leucogenys | ENSNLEG00000013830 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000008741 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000009767 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000048712 | 1 retrocopy |