>retro_hsap_3265 ATGGGCCGCCGCCCCGCCTGTTGTTACCGGTATTGTAAGAACAAGCCGTACCCAAAGTCTCGCTTCTGCCGAGGTGTCCC
TGATGCCAAGATTCGCATTTTTGACCTGGGGCGGAAAAAGGCAAAAGTGGATGAGTTTCCACTTTGTGGCCACATGGTGT
CAGATGAATATGAGCAGCTGTCCTCTGAAGCCCTGGAGGCTGCCCGAATTTGTGCCAATAAGTACATGGTAAAAAGTTGT
GGCAAAGATGGCTTCCATATCCGGGTGCGGCTCCACTCCTTCCACGTCATCCGCATCAACAAGATGTTGTCCTGTGCTGG
GGCTGACAGGCTCCAAACAGGCATGCGAGGTGCCTTTGGAAAGCCCCAGGGCACTTTGGCCAGGGTTCACACTGGCCAAG
TTATCATGTCCATCCGCACCAAGCTGCAGAACAAGGAGCATGTGATTGAGGCCCTGGGCAGGGCCAAGTTCAAGTTTCCT
GGCCGCCAGAAGATCCACATCTCAAAGAAGTGGGGCTTCACCAAGTTCAATGCTGATGAATTTGAAGACATGGTGGCTGA
AAAGCGGCTCATCCCAGATGGCTGTGGGGTCAAGTACATCCCCAATCGTGGCCCTCTGGACAAGTGGCGGGCCCTGCACT
CA
ORF - retro_hsap_3265 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity:
97.66 %
Parental protein coverage:
100. %
Number of stop codons detected:
0
Number of frameshifts detected
0
Retrocopy - Parental Gene Alignment:
Parental MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQLSSEALEAARI
MGRRPA.CYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQLSSEALEAARI
Retrocopy MGRRPACCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQLSSEALEAARI Parental CANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRT
CANKYMVKSCGKDGFHIRVRLH.FHVIRINKMLSCAGADRLQTGMRGAFGKPQGT.ARVH.GQVIMSIRT
Retrocopy CANKYMVKSCGKDGFHIRVRLHSFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTLARVHTGQVIMSIRT Parental KLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAEKRLIPDGCGVKYIPNRGPLDKWR
KLQNKEHVIEAL.RAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAEKRLIPDGCGVKYIPNRGPLDKWR
Retrocopy KLQNKEHVIEALGRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAEKRLIPDGCGVKYIPNRGPLDKWR Parental ALHS
ALHS
Retrocopy ALHS
Legend:
* Stop codon
> Forward frameshift by one nucleotide
< Reverse frameshift by one nucleotide
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library
Retrocopy expression
Parental gene expression
bodymap2_adipose
0 .62 RPM
465 .66 RPM
bodymap2_adrenal
0 .86 RPM
522 .26 RPM
bodymap2_brain
0 .05 RPM
102 .06 RPM
bodymap2_breast
0 .49 RPM
310 .82 RPM
bodymap2_colon
0 .44 RPM
703 .36 RPM
bodymap2_heart
0 .17 RPM
249 .13 RPM
bodymap2_kidney
0 .25 RPM
366 .37 RPM
bodymap2_liver
0 .57 RPM
302 .00 RPM
bodymap2_lung
0 .79 RPM
1014 .17 RPM
bodymap2_lymph_node
1 .06 RPM
1033 .94 RPM
bodymap2_ovary
1 .54 RPM
739 .54 RPM
bodymap2_prostate
1 .89 RPM
1347 .95 RPM
bodymap2_skeletal_muscle
1 .04 RPM
691 .03 RPM
bodymap2_testis
0 .49 RPM
282 .25 RPM
bodymap2_thyroid
0 .55 RPM
300 .94 RPM
bodymap2_white_blood_cells
0 .85 RPM
1398 .58 RPM
RNA Polymerase II actvity near the 5' end of retro_hsap_3265 was not detected
No EST(s) were mapped for retro_hsap_3265 retrocopy.
TSS No.
TSS Name
TSS expression level (Expr) in TPM range:
no expression
0 < Expr ≤ 1
1 < Expr ≤ 5
5 < Expr ≤ 10
Expr > 10
TSS #1
TSS_151901 5 libraries 0 libraries 0 libraries 0 libraries 1824 libraries
The graphical summary, for retro_hsap_3265
TSS expression levels > 0 TPM .
TSS expression levels were studied across 1829 TSS-CAGE libraries, based on FANTOM5 data.
The expression values were visualized using beanplot. If you have any doubts, how to read it, read more in Kampstra P (2008)
retro_hsap_3265 was not experimentally validated.
Retrocopy orthology: Retrocopy retro_hsap_3265 has 0 orthologous retrocopies within eutheria group .
Parental genes homology: Parental genes homology involve
7 parental genes, and
19 retrocopies.
Expression level across human populations :
image/svg+xml
GBR_HG00142
GBR_HG00099
GBR_HG00114
GBR_HG00143
GBR_HG00131
GBR_HG00137
GBR_HG00133
GBR_HG00119
GBR_HG00111
GBR_HG00134
FIN_HG00378
FIN_HG00338
FIN_HG00349
FIN_HG00375
FIN_HG00315
FIN_HG00277
FIN_HG00328
FIN_HG00321
FIN_HG00377
FIN_HG00183
TSI_NA20756
TSI_NA20538
TSI_NA20798
TSI_NA20532
TSI_NA20765
TSI_NA20518
TSI_NA20513
TSI_NA20512
TSI_NA20771
TSI_NA20786
YRI_NA19114
YRI_NA19099
YRI_NA18870
YRI_NA18907
YRI_NA19223
YRI_NA19214
YRI_NA18916
YRI_NA19093
YRI_NA19118
YRI_NA19213
Toscani in Italia:
Finnish in Finland:
British in England and Scotland:
Utah Residents (CEPH) with Northern and Western European Ancestry:
Yoruba in Ibadan, Nigeria:
CEU_NA12760
CEU_NA12827
CEU_NA12872
CEU_NA12751
CEU_NA12873
CEU_NA12400
CEU_NA11930
CEU_NA12004
CEU_NA11831
CEU_NA11843
No expression ( = 0 RPM )
> 0 RPM
= 2.92 RPM
Legend:
Show / hide detail expression values
Library
Retrogene expression
CEU_NA11831
0 .98 RPM
CEU_NA11843
0 .94 RPM
CEU_NA11930
1 .27 RPM
CEU_NA12004
0 .46 RPM
CEU_NA12400
0 .95 RPM
CEU_NA12751
0 .95 RPM
CEU_NA12760
2 .92 RPM
CEU_NA12827
1 .04 RPM
CEU_NA12872
0 .93 RPM
CEU_NA12873
0 .70 RPM
FIN_HG00183
1 .43 RPM
FIN_HG00277
0 .55 RPM
FIN_HG00315
0 .97 RPM
FIN_HG00321
0 .88 RPM
FIN_HG00328
0 .85 RPM
FIN_HG00338
0 .68 RPM
FIN_HG00349
1 .74 RPM
FIN_HG00375
1 .17 RPM
FIN_HG00377
0 .83 RPM
FIN_HG00378
1 .04 RPM
GBR_HG00099
1 .05 RPM
GBR_HG00111
0 .71 RPM
GBR_HG00114
0 .84 RPM
GBR_HG00119
1 .05 RPM
GBR_HG00131
0 .75 RPM
GBR_HG00133
0 .75 RPM
GBR_HG00134
0 .68 RPM
GBR_HG00137
1 .10 RPM
GBR_HG00142
0 .50 RPM
GBR_HG00143
0 .67 RPM
TSI_NA20512
0 .76 RPM
TSI_NA20513
0 .46 RPM
TSI_NA20518
1 .25 RPM
TSI_NA20532
0 .58 RPM
TSI_NA20538
0 .97 RPM
TSI_NA20756
2 .12 RPM
TSI_NA20765
0 .68 RPM
TSI_NA20771
2 .35 RPM
TSI_NA20786
0 .60 RPM
TSI_NA20798
1 .03 RPM
YRI_NA18870
2 .03 RPM
YRI_NA18907
0 .62 RPM
YRI_NA18916
0 .78 RPM
YRI_NA19093
0 .29 RPM
YRI_NA19099
1 .38 RPM
YRI_NA19114
1 .13 RPM
YRI_NA19118
0 .79 RPM
YRI_NA19213
0 .43 RPM
YRI_NA19214
0 .52 RPM
YRI_NA19223
0 .36 RPM
Hide detail expression values Indel association: No indels were associated with its genomic coordinates. Based on Kabza et al. 2015 (
PubMed ).