RetrogeneDB ID: retro_mluc_275

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429848:1940676..1941321(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000028799
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: RPL10
• Ensembl ID: ENSMLUG00000014337
• Aliases: None
• Description: None

Sequence

>retro_mluc_275
ATGGGCCGCCGTCCCGCTCGCTGCTACCGGTACTGTAAGAACAAACCGTATCCGAAGTCTCGCTTCTGCCGCGGTGTCCC
CGACGCCAAGATCCGCATCTTCGACCTGGGGCGGAAGAAGGCGAAAGTGGACGAGTTCCCGCTCTGCGGCCACATGGTGT
CGGATGAGTATGAGCAGCTCTCCTCCGAAGCCCTGGAGGCCGCGCGGATCTGCGCCAACAAGTACATGGTGAAAAGCTGT
GGGAAGGATGGCTTCCACATCCGCGTGCGGCTGCACCCCTTCCACGTCATCCGCATCAACAAGATGCTGTCCTGTGCCGG
GGCCGACAGGCTCCAGACCGGCATGCGGGGCGCCTTCGGGAAGCCGCAGGGCACGGTGGCCCGCGTGCACATCGGCCAGG
TCATCATGTCCATCCGCACCAAGGCGCAGAACAAGGAGCACGTGGTGGAGGCCTTGCGCAGGGCCAAGTTCAAGTTCCCG
GGCCGCCAGAAGATCCACATCTCCAAGAAGTGGGGCTTCACCAAGTTTAACGCCGACGAATTTGAAGACCAAGTGGCCAG
GAAGCGCCTCATCCCCGATGGCTGTGGAGTGAAATACGTCCCCAGCCGCGGCCCTCTGCACAAGTGGCGCGCTCTGCACT
CCTGA

Alignment

ORF - retro_mluc_275 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 96.73 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQLSSEALEAARI
          MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQLSSEALEAARI
Retrocopy MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQLSSEALEAARI

Parental  CANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRT
          CANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRT
Retrocopy CANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRT

Parental  KLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAEKRLIPDGCGVKYIPNRGPLDKWR
          K.QNKEHV.EALRRAKFKFPGRQKIHISKKWGFTKFNADEFED.VA.KRLIPDGCGVKY.P.RGPL.KWR
Retrocopy KAQNKEHVVEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDQVARKRLIPDGCGVKYVPSRGPLHKWR

Parental  ALHS
          ALHS
Retrocopy ALHS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_275 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 19 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000007454	2 retrocopies	retro_btau_140, retro_btau_99,
Homo sapiens	ENSG00000147403	3 retrocopies	retro_hsap_2030, retro_hsap_3265, retro_hsap_3437,
Macropus eugenii	ENSMEUG00000013163	3 retrocopies	retro_meug_1839, retro_meug_5, retro_meug_547,
Myotis lucifugus	ENSMLUG00000014337	3 retrocopies	retro_mluc_1592, retro_mluc_191, retro_mluc_275 ,
Monodelphis domestica	ENSMODG00000008731	2 retrocopies	retro_mdom_177, retro_mdom_829,
Mus musculus	ENSMUSG00000008682	1 retrocopy	retro_mmus_71,
Pongo abelii	ENSPPYG00000020874	5 retrocopies	retro_pabe_173, retro_pabe_1854, retro_pabe_2036, retro_pabe_2843, retro_pabe_2955,