RetrogeneDB ID: | retro_hsap_652 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 10:25936498..25937033(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000227465 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GPN3 | ||
Ensembl ID: | ENSG00000111231 | ||
Aliases: | GPN3, ATPBD1C | ||
Description: | GPN-loop GTPase 3 [Source:HGNC Symbol;Acc:30186] |
Percent Identity: | 70.88 % |
Parental protein coverage: | 63.38 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 2 |
Parental | FDCPGQIELYTHLPVMKQLVQQLEQWEFRVCGVFLVDSQFMVESFKFISGILAALSAMISLEIPQVNIMT |
FDCP...ELY.HL.VMKQLV.QLEQW.FRV.GVFLVD.QFMVESFK.ISGILA.LSAM.SL.IPQVNI.. | |
Retrocopy | FDCPAWTELYIHLTVMKQLVLQLEQWSFRVYGVFLVDPQFMVESFKCISGILAVLSAMLSL*IPQVNIVI |
Parental | KMDLLSKKAKKEIE-KFLDPDMYSLLEDSTSD-LRSKKFKKLTKAICGLIDDYSMVRFLPYDQSDEESMN |
KM.L.SKKAKKE...KFLD.DM.SL..DSTS..L......K.....C...DD.S.V.FLPYDQSDEESMN | |
Retrocopy | KM*LQSKKAKKETV<KFLDLDMDSLFDDSTSG<LKKQRIQKSN*S-CMWADDCSIVLFLPYDQSDEESMN |
Parental | IVLQHIDFAIQYGEDLEFKEPKEREDESSSMFDEYFQECQDE |
IVL.HID.AIQ.GED..FK.PKE.E.ESSSMF.EYFQE.QDE | |
Retrocopy | IVL*HIDLAIQCGEDSTFK*PKEYENESSSMFEEYFQEHQDE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 15 .45 RPM |
bodymap2_adrenal | 0 .00 RPM | 14 .55 RPM |
bodymap2_brain | 0 .02 RPM | 16 .69 RPM |
bodymap2_breast | 0 .00 RPM | 21 .50 RPM |
bodymap2_colon | 0 .00 RPM | 22 .47 RPM |
bodymap2_heart | 0 .00 RPM | 21 .40 RPM |
bodymap2_kidney | 0 .00 RPM | 26 .20 RPM |
bodymap2_liver | 0 .00 RPM | 19 .48 RPM |
bodymap2_lung | 0 .00 RPM | 18 .72 RPM |
bodymap2_lymph_node | 0 .00 RPM | 17 .98 RPM |
bodymap2_ovary | 0 .00 RPM | 18 .16 RPM |
bodymap2_prostate | 0 .00 RPM | 26 .85 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 25 .37 RPM |
bodymap2_testis | 0 .00 RPM | 49 .13 RPM |
bodymap2_thyroid | 0 .00 RPM | 28 .89 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 16 .18 RPM |
Species | RetrogeneDB ID |
---|---|
Gorilla gorilla | retro_ggor_570 |
Macaca mulatta | retro_mmul_2435 |
Callithrix jacchus | retro_cjac_2969 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000009339 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000016646 | 1 retrocopy | |
Homo sapiens | ENSG00000111231 | 1 retrocopy |
retro_hsap_652 ,
|
Gorilla gorilla | ENSGGOG00000001697 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000015510 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000006494 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000002831 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |