RetrogeneDB ID: | retro_mmul_2435 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 9:25841209..25841742(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.9827 | ||
Ensembl ID: | ENSMMUG00000006494 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 68.31 % |
Parental protein coverage: | 68.7 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 3 |
Parental | FDCPGQIELYTHLPVMKQLVQQLEQWEFRVCGVF-LVDSQFMVESFKFISGILAALSAMISLEIPQVNIM |
FDCP...ELY.HL.VMKQLV.QLEQW.F.V.GVF.LVDSQFMVESFK.ISGILA.LSAM.SLEI.QVNI. | |
Retrocopy | FDCPAWTELYIHLTVMKQLVLQLEQWGF*VYGVF>LVDSQFMVESFKSISGILAVLSAMLSLEILQVNIV |
Parental | TKMDLLSKKAKKEIE-KFLDPDMYSLLEDSTSD-LRSKKFKKMTKAICGLIDDYSMVRFLPYDQSDEESM |
.KM.L.SKKAKKE.E..FLDPDM.SL...ST.D.L......K.....C...DD.S.V.FLP.DQSDEESM | |
Retrocopy | IKM*LQSKKAKKETE<EFLDPDMDSLFNYSTND<LKKQNIQKSN*S-CMWTDDCSIVLFLPHDQSDEESM |
Parental | NIVLQHIDFAIQYGEDLEFKEPKEREDESSSMFDEYFQECQDE |
NIVL.HIDFAIQ.GED..FK..KE.E...S.MFDEYFQ..QDE | |
Retrocopy | NIVL*HIDFAIQCGEDSKFK*LKEHENK-SCMFDEYFQGHQDE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 9 .30 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 8 .96 RPM |
SRP007412_cerebellum | 0 .00 RPM | 9 .69 RPM |
SRP007412_heart | 0 .00 RPM | 7 .77 RPM |
SRP007412_kidney | 0 .00 RPM | 9 .62 RPM |
SRP007412_liver | 0 .00 RPM | 2 .85 RPM |
SRP007412_testis | 0 .00 RPM | 20 .69 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_652 |
Gorilla gorilla | retro_ggor_570 |
Callithrix jacchus | retro_cjac_2969 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000009339 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000016646 | 1 retrocopy | |
Homo sapiens | ENSG00000111231 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000001697 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000015510 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000006494 | 1 retrocopy |
retro_mmul_2435 ,
|
Nomascus leucogenys | ENSNLEG00000002831 | 1 retrocopy |