RetrogeneDB ID: | retro_hsap_942 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 11:130416693..130417322(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000236616 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BAK1 | ||
Ensembl ID: | ENSG00000030110 | ||
Aliases: | BAK1, BAK, BAK-LIKE, BCL2L7, CDN1 | ||
Description: | BCL2-antagonist/killer 1 [Source:HGNC Symbol;Acc:949] |
Percent Identity: | 89.25 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | MASGQGPGPPRQECGEPALPSASEEQVAQDTEE-VFRSYVFYRHQQEQEAEGVAAPADPEMVTLPLQPSS |
MASGQGPGPPRQECG.PALPSASEEQVAQD.E..VFRSYVFY.HQQEQEAEG.AAPADPEMVTLPLQPSS | |
Retrocopy | MASGQGPGPPRQECGKPALPSASEEQVAQDMEG<VFRSYVFYHHQQEQEAEGAAAPADPEMVTLPLQPSS |
Parental | TMGQVGRQLAII-GDDINRRYD-SEFQTMLQHLQPTAENAYEYFTKIATSLFESGINWGRVVALLGFGYR |
TMGQVGRQLAI...DDINR.YD.SEFQTMLQHLQPTAENAYEYFTKIA.SLFESGIN.GRVVALLGFGYR | |
Retrocopy | TMGQVGRQLAIT<QDDINRHYD>SEFQTMLQHLQPTAENAYEYFTKIASSLFESGINRGRVVALLGFGYR |
Parental | LALHVYQHGLTGFLGQVTRFVVDFMLHHCIARWIAQRGGWVAALNLGNGPILNVLVVLGVVLLGQFVVRR |
L.LHVYQHGLTGFLG.VTRFVV.FML...IARWI.QRGGWVAAL.LGN.PILNVLVV.GVVLLGQFVVRR | |
Retrocopy | LVLHVYQHGLTGFLGLVTRFVV-FMLQQGIARWISQRGGWVAALDLGNSPILNVLVVVGVVLLGQFVVRR |
Parental | FFKS |
FFKS | |
Retrocopy | FFKS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 6 .36 RPM |
bodymap2_adrenal | 0 .00 RPM | 13 .78 RPM |
bodymap2_brain | 0 .00 RPM | 5 .48 RPM |
bodymap2_breast | 0 .00 RPM | 6 .65 RPM |
bodymap2_colon | 0 .00 RPM | 8 .47 RPM |
bodymap2_heart | 0 .00 RPM | 6 .78 RPM |
bodymap2_kidney | 0 .00 RPM | 17 .83 RPM |
bodymap2_liver | 0 .00 RPM | 3 .93 RPM |
bodymap2_lung | 0 .00 RPM | 10 .79 RPM |
bodymap2_lymph_node | 0 .00 RPM | 18 .18 RPM |
bodymap2_ovary | 0 .02 RPM | 9 .45 RPM |
bodymap2_prostate | 0 .00 RPM | 9 .16 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 3 .62 RPM |
bodymap2_testis | 0 .00 RPM | 6 .54 RPM |
bodymap2_thyroid | 0 .00 RPM | 6 .80 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 34 .65 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_652 |
Gorilla gorilla | retro_ggor_761 |
Macaca mulatta | retro_mmul_1130 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Felis catus | ENSFCAG00000013657 | 1 retrocopy | |
Homo sapiens | ENSG00000030110 | 2 retrocopies |
retro_hsap_2468, retro_hsap_942 ,
|
Gorilla gorilla | ENSGGOG00000022462 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000009104 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000008351 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000001127 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000018053 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .03 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |