RetrogeneDB ID: | retro_opri_938 | ||
Retrocopylocation | Organism: | Southern American pika (Ochotona princeps) | |
Coordinates: | scaffold_4777:111306..111703(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BAK1 | ||
Ensembl ID: | ENSOPRG00000001127 | ||
Aliases: | None | ||
Description: | BCL2-antagonist/killer 1 [Source:HGNC Symbol;Acc:949] |
Percent Identity: | 75. % |
Parental protein coverage: | 63.51 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | MASGQSPGPPSEG-CDEPSQPRNSEQQVVQDSEEVFRSYVFYRHQQEQETEGAAAPVDPEMASWHPAPNS |
MASG..PGPPSEG.CDE.S.P.N..QQV..DSEEV..SYVFYRHQQEQET.GAA.PVDPEMAS.HPAPNS | |
Retrocopy | MASGPGPGPPSEG<CDEASKPPNYKQQVA*DSEEVLHSYVFYRHQQEQETKGAATPVDPEMASGHPAPNS |
Parental | MMAQVGRQLAFIGDDINQRYEADFQSI-LEKLQPTAENAYELFIKIASSLFESGINWGRVVALLGF |
...QVG..LA.I.D.INQRY..DFQSI.LEK.Q.TAENAYE.F.KIASSLFESGI.WGR.VA.L.F | |
Retrocopy | ILGQVG**LAIIEDNINQRYDLDFQSI<LEKQQSTAENAYEMF-KIASSLFESGISWGRAVAFLSF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Felis catus | ENSFCAG00000013657 | 1 retrocopy | |
Homo sapiens | ENSG00000030110 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000022462 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000009104 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000008351 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000001127 | 2 retrocopies |
retro_opri_105, retro_opri_938 ,
|
Pan troglodytes | ENSPTRG00000018053 | 1 retrocopy |