RetrogeneDB ID: | retro_nleu_296 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397262.1:64159543..64160104(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSNLEG00000007495 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BAK1 | ||
Ensembl ID: | ENSNLEG00000008351 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 85.94 % |
Parental protein coverage: | 99.47 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | SEEQVARDTEEV-FRSYVFYRHQQEQEAEGAAAPADPEMVTLPLQPSSTMGQVGRQLAIIG-DDINRRYD |
SEEQVARD.E...FRSYVFYRHQQEQEAEGAAAPADPEMVTLPLQPSSTMGQVGRQLAI.G..DINRRYD | |
Retrocopy | SEEQVARDMEGL<FRSYVFYRHQQEQEAEGAAAPADPEMVTLPLQPSSTMGQVGRQLAITG<GDINRRYD |
Parental | SEFR-MLQHLQPTAENVYEYFTKIASSLFESGINWGRVVALLAFGYRMALHVYQHGLTGF-LGQVTRFVV |
.EF...LQHLQPTAEN.YEYFTKIASSLFESGI.WGRVVA.L.FGYR..LHVYQ.GLTGF.LG.VTRFVV | |
Retrocopy | WEFQTVLQHLQPTAENAYEYFTKIASSLFESGISWGRVVAVLGFGYRLVLHVYQRGLTGF<LGLVTRFVV |
Parental | DFMLHRCIARWIAQRGGWVAALDLGNGPILIVLVVLGVVLLGQFVVRRFFKS |
.F.L..CIA.WIAQRGGWVAALDLGNGPIL.VLVV.GVVLLGQFVVRRFFKS | |
Retrocopy | -FILQHCIAQWIAQRGGWVAALDLGNGPILNVLVVVGVVLLGQFVVRRFFKS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Felis catus | ENSFCAG00000013657 | 1 retrocopy | |
Homo sapiens | ENSG00000030110 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000022462 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000009104 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000008351 | 1 retrocopy |
retro_nleu_296 ,
|
Ochotona princeps | ENSOPRG00000001127 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000018053 | 1 retrocopy |