RetrogeneDB ID: | retro_itri_1105 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393376.1:3585579..3586514(-) | ||
Located in intron of: | ENSSTOG00000010540 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MFAP1 | ||
Ensembl ID: | ENSSTOG00000006967 | ||
Aliases: | None | ||
Description: | microfibrillar-associated protein 1 [Source:HGNC Symbol;Acc:7032] |
Percent Identity: | 70.86 % |
Parental protein coverage: | 72.89 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 6 |
Parental | ALMKQPPIQSTAGAVPVRNEKGEISMEKVKVKRYVSGKRPDYAP-MESSDEEDEEFQFIKKAKEQEAEPE |
ALMKQ.PIQS.AGA..VR.E.GEISMEK.KVKRYVSGK.PDYAP.MESSDE.D.EFQFIKK..E.EA..E | |
Retrocopy | ALMKQLPIQSKAGAILVRSENGEISMEKIKVKRYVSGKKPDYAP<MESSDEKDKEFQFIKKTQELEAQLE |
Parental | EQEEDSSSDPRLRRLQNRISEDVEERLARHRKIVE-PEVVGESDSEVEGDAWRMERE-DTSEEEEEEIDD |
EQEEDSSSDP.LR.L.NR..EDVEERLA...KIV..P.VVGESDSEV.GDAW.ME.E...SEE.EE.ID. | |
Retrocopy | EQEEDSSSDPWLRHL*NR--EDVEERLAQNPKIVY<PKVVGESDSEV-GDAWCMEQE<SSSEEKEENID- |
Parental | EEIERRRGMMRQRAQERKN-EEMEVMEVEDEGRSGEESESESEYEEYTDSEDEMEPRLKP-VFIRKKDRV |
E..E...GMM.Q..QERKN.EEMEVMEV.DE..SGEESESESEYE.YT..EDEMEP...P...I.KKD.. | |
Retrocopy | EDVELHHGMMCQ*GQERKN>EEMEVMEV*DEEHSGEESESESEYEDYTYNEDEMEPCFTP<ILI*KKDQM |
Parental | TVQEREAEALKQKELEQEAKRMAEERRKYTLKIVEEETKKELEENKRS-LAALDALNTDDENDEEEYEAW |
TVQ..EAEALKQKE.EQ.AK.MAE.RR.YTLKIVEEETKKELEENK.S.LAALD.L.TD.ENDEEEYEAW | |
Retrocopy | TVQKCEAEALKQKEMEQGAKPMAEGRRNYTLKIVEEETKKELEENKCS<LAALDVLSTDSENDEEEYEAW |
Parental | KVRELKRIKRDREDREALEKEKAEIERMRNLTEEERRAELRANGKV |
KVR.LK....DR.DREA..K.KAEI..M.NLTE.........N..V | |
Retrocopy | KVRKLK---KDRKDREAHKKKKAEIAHM*NLTELQANGKVITNKSV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dipodomys ordii | ENSDORG00000013870 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000013000 | 2 retrocopies | |
Mus musculus | ENSMUSG00000048222 | 2 retrocopies | |
Mus musculus | ENSMUSG00000068479 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000010206 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000015984 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000014628 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000006967 | 2 retrocopies |
retro_itri_1105 , retro_itri_1494,
|
Tupaia belangeri | ENSTBEG00000005050 | 2 retrocopies |