RetrogeneDB ID: | retro_ogar_1784 | ||
Retrocopylocation | Organism: | Bushbaby (Otolemur garnettii) | |
Coordinates: | GL873565.1:13914477..13915742(+) | ||
Located in intron of: | ENSOGAG00000030467 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | B5SNK0_OTOGA | ||
Ensembl ID: | ENSOGAG00000010206 | ||
Aliases: | None | ||
Description: | Microfibrillar-associated protein 1 (Predicted) [Source:UniProtKB/TrEMBL;Acc:B5SNK0] |
Percent Identity: | 85.11 % |
Parental protein coverage: | 96.13 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | PSSLMKQPPIQSTAGAVPVRNEKGEISMEKVKVKRYVSGKRPDYAPMESSDEEDEEFQFIKKAKEQEAEP |
P.SLMKQ.PIQ..AGAV.V.NEKGEISMEKVKVKRYVS.KRPDYAPMESSDEEDEEF.FIKKAKEQEAEP | |
Retrocopy | PNSLMKQLPIQLRAGAVLVSNEKGEISMEKVKVKRYVSRKRPDYAPMESSDEEDEEFSFIKKAKEQEAEP |
Parental | EEQEEDSSSDPRLRRLQNRISEDVEERLARHRKIVEPEVVGESDSEVEGDAWRMEREDSSEEEEEEIDDE |
EEQEEDSSSDP.L..LQNRISEDVEERLA...K.VEPEVV.ESDSEVEG.AW.ME.EDS.E.EEEEIDDE | |
Retrocopy | EEQEEDSSSDPWLWCLQNRISEDVEERLAELQKTVEPEVVVESDSEVEGAAWCME*EDSNEGEEEEIDDE |
Parental | EIERRRGMMRQRAQERKNEEMEVMEVEDEGRSGEESESESEYEEYTDSEDEMEPRLKPVFIRKKDRVTVQ |
E.E...GMMRQRAQERKNEEMEVMEV.DEGRSGEES.SESEYEEYTDSED.ME...KPVFIRKKD.VTVQ | |
Retrocopy | ETEWSCGMMRQRAQERKNEEMEVMEVDDEGRSGEESGSESEYEEYTDSEDGMESHFKPVFIRKKDKVTVQ |
Parental | EREAEALKQKELEQEAKRMAEERRKYTLKIVEEETKKELEENKRSLAALDALNTDDENDEEEYEAWKVRE |
E.EAEAL.QKELE.EAK.MAE.RRKY.LKIVEEE.KKELEENK.SLAALDALNTDDENDEEEYEAWK..E | |
Retrocopy | EHEAEALIQKELE*EAKCMAEKRRKYALKIVEEENKKELEENKWSLAALDALNTDDENDEEEYEAWKFQE |
Parental | LKRIKRDREDREALEKEKAEIERMRNLTEEERRAELRANGKVITNKAVKGKYKFLQKYYHRGAFFMDEDE |
LKRI.RDREDREALEKEKAEIE.MRNLT.EERRAEL.ANGKVIT.KAVKGKYKFLQKYYHRGAFFM.EDE | |
Retrocopy | LKRI*RDREDREALEKEKAEIECMRNLTQEERRAELQANGKVITKKAVKGKYKFLQKYYHRGAFFMGEDE |
Parental | EVYKRDFSAPTLEDHFNKTILPKVMQVKNFG-RSGRTKYTHLVDQDTTSFDSAWGQESAQNTKFFKQKAA |
.VYKRDFSAPTLEDHFNKTILPKVMQVKNFG..SG.TKYTHLVDQDTTSFDSAWGQES.QN......... | |
Retrocopy | AVYKRDFSAPTLEDHFNKTILPKVMQVKNFG<HSGHTKYTHLVDQDTTSFDSAWGQESTQNKVL*TKGSW |
Parental | GVR |
G.R | |
Retrocopy | GMR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dipodomys ordii | ENSDORG00000013870 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000013000 | 2 retrocopies | |
Mus musculus | ENSMUSG00000048222 | 2 retrocopies | |
Mus musculus | ENSMUSG00000068479 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000010206 | 1 retrocopy |
retro_ogar_1784 ,
|
Rattus norvegicus | ENSRNOG00000015984 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000014628 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000006967 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000005050 | 2 retrocopies |