RetrogeneDB ID: | retro_tbel_3246 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_134831:9578..10277(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MFAP1 | ||
Ensembl ID: | ENSTBEG00000005050 | ||
Aliases: | None | ||
Description: | microfibrillar-associated protein 1 [Source:HGNC Symbol;Acc:7032] |
Percent Identity: | 63.83 % |
Parental protein coverage: | 69.03 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | RKKDRVTVQEREAEALK-QKELEQEAKRMAEERRKYTLKIVEEETKKELEENKRSLAALDALNTDDENDE |
...DR....E...E....QK.L.QEA...A.ER..Y.L...E...KK...E....LAA.DALN.DDEN.E | |
Retrocopy | KQNDRCLLLESTYEIERPQKGLQQEAEFTAKERCRYMLQVLEKAMKKL--ETGWPLAARDALNGDDENEE |
Parental | EEYEAWKVRELKRIKRDREDREALEKEKAEIERMRNLTEEERRAELRANGKVITNKAVKGKYKFLQKYYH |
E.YEAW.V.ELKRI........ALE..KAE.....NLTEEERRA.L.AN..VITN..VKGK..FLQKYYH | |
Retrocopy | EVYEAWEV*ELKRIXXXXXXXXALEEKKAEM*HLQNLTEEERRAQLQANVTVITNQDVKGKCRFLQKYYH |
Parental | RGAFFMDEDEEVYKRDFSAPTLEDHFNKTILPKVMQVKNFGRSGRTKYTHLVDQDTTSFDSAWGQESAQN |
.G..FMD..E.VYKRDFS.PTLEDHF.K..LPKV.QVKNF..SG.TKYTHLVDQDTTSFDSAWGQESA.N | |
Retrocopy | WGTLFMDKEEDVYKRDFSVPTLEDHFDKIVLPKVIQVKNFVCSGWTKYTHLVDQDTTSFDSAWGQESAPN |
Parental | TKFFKQKAAGVRDVFERPSAKKRKT |
.KFFK.KAAGV.DVFERPSAKK..T | |
Retrocopy | RKFFKEKAAGVQDVFERPSAKKQRT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dipodomys ordii | ENSDORG00000013870 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000013000 | 2 retrocopies | |
Mus musculus | ENSMUSG00000048222 | 2 retrocopies | |
Mus musculus | ENSMUSG00000068479 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000010206 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000015984 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000014628 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000006967 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000005050 | 2 retrocopies |
retro_tbel_3001, retro_tbel_3246 ,
|