RetrogeneDB ID: | retro_itri_1348 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393448.1:1642210..1642689(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSTOG00000020921 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PDCD2 | ||
Ensembl ID: | ENSSTOG00000022768 | ||
Aliases: | None | ||
Description: | programmed cell death 2 [Source:HGNC Symbol;Acc:8762] |
Percent Identity: | 86.42 % |
Parental protein coverage: | 64.66 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | VFRNQLPRKNEFYSYEPPSENPSPETESVCLQLKSGAHLCRVCGC-LGPKTCSRCHQAHYCSKEHQTLDW |
VFRNQL.RKN.FYSYEP.SENP.PE.E.VCLQLKSGAHLCRVCG..LGPKTCSRC.QAHYCSKEHQTLDW | |
Retrocopy | VFRNQLSRKNKFYSYEPSSENPFPESEPVCLQLKSGAHLCRVCGS<LGPKTCSRCRQAHYCSKEHQTLDW |
Parental | RLGHKQACTQVDHLDHTVPDHNFLFPEFEIVIETEEEIVPEVVEKEEDFEITGSMDEALEEELDSMAKHE |
RL.HKQ.CTQ..HLDHTVP.HNFLF.EFEIVIETEEEIVPEVV.KEEDFEITGS.DEALE.ELDSM.KHE | |
Retrocopy | RLEHKQPCTQ-GHLDHTVPGHNFLFLEFEIVIETEEEIVPEVVKKEEDFEITGSTDEALEGELDSMGKHE |
Parental | SREDNIFQKFKAQIALEPEQIL |
SRE.NIFQKFKAQIALEPEQ.. | |
Retrocopy | SRENNIFQKFKAQIALEPEQVM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000020634 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000002920 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000019916 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000017193 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000025312 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000022768 | 2 retrocopies |
retro_itri_1348 , retro_itri_1635,
|