RetrogeneDB ID: | retro_itri_1587 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393558.1:1661640..1662333(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ENOPH1 | ||
Ensembl ID: | ENSSTOG00000013987 | ||
Aliases: | None | ||
Description: | enolase-phosphatase 1 [Source:HGNC Symbol;Acc:24599] |
Percent Identity: | 91.34 % |
Parental protein coverage: | 97.88 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | ILFPYIKENVKEYLQTHWEEEECQQDVNLLRKQAEEDAHLDGAIPIPAASGNGVDELQQIIQAVVDNVCW |
ILF...KENVKEYLQTHWEEEECQ.DV.LLR.QAEEDAHLDGAIPIPAASGNGVDELQQIIQAV..NVCW | |
Retrocopy | ILFS*SKENVKEYLQTHWEEEECQ*DVSLLR*QAEEDAHLDGAIPIPAASGNGVDELQQIIQAVLENVCW |
Parental | QMSLDRKTTALKQLQGHMWRAAFTAGHMKAEFFEDVVPAVRKWREDGMKVYIYSSGSVEAQKLLFGHSTE |
QMSLD.KTTALKQLQGHMWRAA.TAGHMKAEFFED.VPA.RKWREDGMKVYIYSSGSVEAQKLLFG.STE | |
Retrocopy | QMSLDLKTTALKQLQGHMWRAASTAGHMKAEFFEDEVPADRKWREDGMKVYIYSSGSVEAQKLLFGQSTE |
Parental | GNILELFDGHFDTKIGHKVESESYKKIANSIGCSTNNILFLTDITLEASAAEEAGVHVAVVVRPGNAGLT |
GNILELFD.HFDTK.GHKVESE.YKKIANSIGCSTNNILFLTD.TLEASAAEEAGVHVAVVVRPGNAGLT | |
Retrocopy | GNILELFDDHFDTKVGHKVESECYKKIANSIGCSTNNILFLTDVTLEASAAEEAGVHVAVVVRPGNAGLT |
Parental | DDEKTSYSLITSFSELYLPSS |
.DEKT.YSLITSFSEL.LPSS | |
Retrocopy | ADEKTFYSLITSFSELHLPSS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000003283 | 4 retrocopies | |
Equus caballus | ENSECAG00000019612 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000004274 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000008619 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000011458 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000013987 | 2 retrocopies |
retro_itri_1067, retro_itri_1587 ,
|
Tursiops truncatus | ENSTTRG00000001800 | 1 retrocopy |