RetrogeneDB ID: | retro_itri_1598 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393564.1:126744..127188(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSTOG00000024440 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EAPP | ||
Ensembl ID: | ENSSTOG00000005273 | ||
Aliases: | None | ||
Description: | E2F-associated phosphoprotein [Source:HGNC Symbol;Acc:19312] |
Percent Identity: | 90.54 % |
Parental protein coverage: | 51.93 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | LFIPYRTNRSLIYVDSYRHNXHGFGLQRPRHQQPVPNSDAVLNCPACMTTLCLDCQRHESYKTQYRAMFV |
L..P...NR....VD..R...HGFGLQRPRHQQPVPNSDAVLNCPACMTTLCLDCQRHESYKTQYRAMFV | |
Retrocopy | LYDPEKDNRDQAWVDAQRRGYHGFGLQRPRHQQPVPNSDAVLNCPACMTTLCLDCQRHESYKTQYRAMFV |
Parental | MNCSVNKEEVLRYKNSENRKKRRGYKKMKSNHEDSAEQAETEVEEIYHPVMCTECSTEVAVYDKDEVFHF |
MNCSVNKEEVLRYKNSENRKKRRGYKKMKSNHEDSAEQAETEVEEIYHPVMCTECSTEVAVYDKDEVFHF | |
Retrocopy | MNCSVNKEEVLRYKNSENRKKRRGYKKMKSNHEDSAEQAETEVEEIYHPVMCTECSTEVAVYDKDEVFHF |
Parental | FNVLASHS |
FNVLASHS | |
Retrocopy | FNVLASHS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000005391 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000003005 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000013814 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000014525 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000001029 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000003226 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000005273 | 2 retrocopies |
retro_itri_1598 , retro_itri_237,
|
Tupaia belangeri | ENSTBEG00000001306 | 1 retrocopy |