RetrogeneDB ID: retro_mputfur_19

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896995.1:4959655..4960516(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMPUG00000018690
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMPUG00000001029
• Aliases: None
• Description: E2F-associated phosphoprotein-like protein [Source:UniProtKB/TrEMBL;Acc:G9L0G6]

Sequence

>retro_mputfur_19
ATGAACCGGCTCCAGGAGGACTACGACCCCTACGCGGTAGAAGAGCCTAGCGACGAAGAACCCGCTTTGAGCAGTTCTGA
AGATGAAGTGGATGTGCTTTTACATGGAACTCCTGACCAAAAACGAAAACTCATCAGAGAATGTCTTACTGGAGAAAGTG
AATCATCTAGTGAAGATGAATTTGAAAAAGAAATGGAAGCCGAATTAAATTCTACCATAAAAACAATGGAGGACAAGTTA
TCCTCTCTGGAAACAGGGTCTTCCTCGGGAGCTGGAAAAGTTGGAACAGCTCTGACAAAGTACTATGATGATATATATTT
TGATTCTGATTCTGAGGATGAAGACAAACCAGCACAGGTGACCAAGAAGAAGAAGAAAAAGCGACACAGGATTCCAACAA
ATGATGAGTTACTATATGATCCTGAAAAAGATAACAGAGATCAGGCCTGGGTTGATGCACAGAGAAGAGGCTACCATGGT
TTTGGAATACAGAGGCCACATCAACAACAGCAGCCTGTTCCAAATAGTGATGCTGTCTTGAATTGCCCTGCCTGCATGAC
CACACTATGTCTTGATTGCCAAAGGCACGAATCCTACAAAACTCAGTATAGAGCAATGTTTGTGATGAATTGTTCTGTCA
ACAAAGAGGAGGTTCTAAGATACAAAATCCCAGAGAACAGGAAGAAAAGGCGAGGCCCTAAGAAGATGAGGTCCAGCCAT
GAGGATGCTGCAGAGCCAGCAGAGGCACAAGCAGAAGAACTCTACCACCCAGTCATGTGCACCGAATGTTCCACTGAAGT
TGCAGTCTATGACAAGGATGAAGTCTTTCATTTTTTCAATGTTTTAGCAAGTCATTCTTAA

Alignment

ORF - retro_mputfur_19 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 98.61 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MNRLQEDYDPYAVEEPSDEEPALSSSEDEVDVLLHGTPDQKRKLIRECLTGESESSSEDEFEKEMEAELN
          MNRLQEDYDPYAVEEPSDEEPALSSSEDEVDVLLHGTPDQKRKLIRECLTGESESSSEDEFEKEMEAELN
Retrocopy MNRLQEDYDPYAVEEPSDEEPALSSSEDEVDVLLHGTPDQKRKLIRECLTGESESSSEDEFEKEMEAELN

Parental  STIKTMEDKLSSLETGSSSGAGKVGTALTKYYDDIYFDSDSEDEDKP-EVTKKKKKKRHRIPTNDELLYD
          STIKTMEDKLSSLETGSSSGAGKVGTALTKYYDDIYFDSDSEDEDKP..VTKKKKKKRHRIPTNDELLYD
Retrocopy STIKTMEDKLSSLETGSSSGAGKVGTALTKYYDDIYFDSDSEDEDKPAQVTKKKKKKRHRIPTNDELLYD

Parental  PEKDNRDQAWVDAQRRRDYHGFGIQRPHQQQQPVPNSDAVLNCPACMTTLCLDCQRHESYKTQYRAMFVM
          PEKDNRDQAWVDAQ.RR.YHGFGIQRPHQQQQPVPNSDAVLNCPACMTTLCLDCQRHESYKTQYRAMFVM
Retrocopy PEKDNRDQAWVDAQ-RRGYHGFGIQRPHQQQQPVPNSDAVLNCPACMTTLCLDCQRHESYKTQYRAMFVM

Parental  NCSVNKEEVLRYKIPENRKKRRGPKKMRSSHEDAAEPAEAQAEELYHPVMCTECSTEVAVYDKDEVFHFF
          NCSVNKEEVLRYKIPENRKKRRGPKKMRSSHEDAAEPAEAQAEELYHPVMCTECSTEVAVYDKDEVFHFF
Retrocopy NCSVNKEEVLRYKIPENRKKRRGPKKMRSSHEDAAEPAEAQAEELYHPVMCTECSTEVAVYDKDEVFHFF

Parental  NVLASHS
          NVLASHS
Retrocopy NVLASHS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_19 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_19 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000005391	1 retrocopy	retro_cjac_3231,
Cavia porcellus	ENSCPOG00000003005	1 retrocopy	retro_cpor_898,
Myotis lucifugus	ENSMLUG00000013814	1 retrocopy	retro_mluc_596,
Monodelphis domestica	ENSMODG00000014525	1 retrocopy	retro_mdom_1226,
Mustela putorius furo	ENSMPUG00000001029	1 retrocopy	retro_mputfur_19 ,
Oryctolagus cuniculus	ENSOCUG00000003226	1 retrocopy	retro_ocun_1701,
Ictidomys tridecemlineatus	ENSSTOG00000005273	2 retrocopies	retro_itri_1598, retro_itri_237,
Tupaia belangeri	ENSTBEG00000001306	1 retrocopy	retro_tbel_4258,