RetrogeneDB ID: retro_mluc_596

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429769:9987567..9988414(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: EAPP
• Ensembl ID: ENSMLUG00000013814
• Aliases: None
• Description: None

Sequence

>retro_mluc_596
ATGAACTGGCTCCAAGATGACCATGACCCCTGCGCAGTTTAAGAACCTAGTGATGAGGAGCCGGCTTTGAGCAGTTCTGA
AGATGAAGTGAATGTGCTTTTACATGGAACTCCTGACCAAAAATGAAAACTCATCAGAGAATGTCTTACTGGAGAAAGTG
AAGATGAATTTGAAAAAGAAATGGAAGCTGAATTAAATTCCACCAAAAAAAAAAATGGAGGTCAAATTATCTTCCCTGAA
AACAGGGTCTTCTTCAGGAAATGGAAAAGTTGGAATAGCTTCCACAAAGTACTATGATGATATATATTTTGATTCTGATT
CTGAGGATGAAGACAAAACAGCACAGGTGACCAAGAGAAAAAGGAAGAAATGACACAGGAGTCTAACAAATGATGAATTA
CTATATGATCCTGAAAACGATAACAGAGATCAGGCCTGGGTTGATGCACGGAGAAGAGGATACCATGGTTTTGGAATACA
GAGGCCACTTCAACAGCAACAGACTGTTTCAAATAGCGATGCTATCTTGAATTGCCCTGCCTACATGACCACACTGTGTC
TTGATTATCAAAGGCATGAATCATACAAAACTCAGTATAGAGCGATGTGTGTGAGGAATTGTTCTGTCAACAAAGAGGAG
GTTCTAAGATACAAAACCCCAGAGAACAGGAAGAAAAAGCGAGGCCATAAGAAGATGAGGGCTAGCCATGAAGATGCTAC
AGAGCAGGCAGAAATAGAAGTGGAAGAAATCTATCACCCAGTCATGTGCACTGAATGTTCCACTGAAGTGGCAGTCTATG
ACAAGGATGAAGTCTTTCACTTTTTCAGTGTTTTGGCAAGCCATTCC

Alignment

ORF - retro_mluc_596 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 87.41 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MNRLQDDYDPYAVEEPSDEEPALSSSEDEVDVLLHGTPDQKRKLIRECLTGESESSEDEFEKEMEAELNS
          MN.LQDD.DP.AV.EPSDEEPALSSSEDEV.VLLHGTPDQK.KLIRECLTGE...SEDEFEKEMEAELNS
Retrocopy MNWLQDDHDPCAV*EPSDEEPALSSSEDEVNVLLHGTPDQK*KLIRECLTGE---SEDEFEKEMEAELNS

Parental  TIKTM-EVKLSSLETGSSSGNGKVGTASTKYYDDIYFDSDSEDEDKTTQVTKRKKKKRHRILTNDELLYD
          T.....EVKLSSL.TGSSSGNGKVG.ASTKYYDDIYFDSDSEDEDKT.QVTKRK.KK.HR.LTNDELLYD
Retrocopy TXXXX>EVKLSSLKTGSSSGNGKVGIASTKYYDDIYFDSDSEDEDKTAQVTKRKRKK*HRSLTNDELLYD

Parental  PEKDNRDQAWVDARRRGYHGFGIQRPRQQQQPVPNSDAVLNCPACMTTLCLDCQRHESYKTQYRAMFVMN
          PE.DNRDQAWVDARRRGYHGFGIQRP.QQQQ.V.NSDA.LNCPA.MTTLCLD.QRHESYKTQYRAM.V.N
Retrocopy PENDNRDQAWVDARRRGYHGFGIQRPLQQQQTVSNSDAILNCPAYMTTLCLDYQRHESYKTQYRAMCVRN

Parental  CSVNKEEVLRYKTPENRKKKRGHKKMRANHEDAAEQTDTEVEEIYHPVMCTECSTEVAVFDKDEVFHFFN
          CSVNKEEVLRYKTPENRKKKRGHKKMRA.HEDA.EQ...EVEEIYHPVMCTECSTEVAV.DKDEVFHFF.
Retrocopy CSVNKEEVLRYKTPENRKKKRGHKKMRASHEDATEQAEIEVEEIYHPVMCTECSTEVAVYDKDEVFHFFS

Parental  VLASHS
          VLASHS
Retrocopy VLASHS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_596 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000005391	1 retrocopy	retro_cjac_3231,
Cavia porcellus	ENSCPOG00000003005	1 retrocopy	retro_cpor_898,
Myotis lucifugus	ENSMLUG00000013814	1 retrocopy	retro_mluc_596 ,
Monodelphis domestica	ENSMODG00000014525	1 retrocopy	retro_mdom_1226,
Mustela putorius furo	ENSMPUG00000001029	1 retrocopy	retro_mputfur_19,
Oryctolagus cuniculus	ENSOCUG00000003226	1 retrocopy	retro_ocun_1701,
Ictidomys tridecemlineatus	ENSSTOG00000005273	2 retrocopies	retro_itri_1598, retro_itri_237,
Tupaia belangeri	ENSTBEG00000001306	1 retrocopy	retro_tbel_4258,