RetrogeneDB ID: | retro_itri_1621 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393578.1:1178423..1178983(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NAB1 | ||
Ensembl ID: | ENSSTOG00000000098 | ||
Aliases: | None | ||
Description: | NGFI-A binding protein 1 (EGR1 binding protein 1) [Source:HGNC Symbol;Acc:7626] |
Percent Identity: | 76.72 % |
Parental protein coverage: | 56.12 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | GSLALQSVGESRLWQGHHATESEHSLSPADLGSPASPKESSEALDAAAALSVAECVERMAHTLPKSDLNE |
G......V...RLWQGHHATE.EHSL.PAD.GSPA..KESSEALDAAAA.SVAECVERMA.TL.KSDLNE | |
Retrocopy | GKSDVMGV*HNRLWQGHHATEREHSLTPADRGSPAFSKESSEALDAAAAFSVAECVERMAPTLTKSDLNE |
Parental | VKELL-KNNKKLAKMIGHIFEMSDDDPHKEEEIRKYSAIYGRFDSKRKDGKHLTLHELTVNEAAAQLCVK |
.KELL.KN.........H.FEMS.DDP.KEEEIRKYSA.YGRFDS..KDGKHLTLHELTVNEAAAQ..VK | |
Retrocopy | GKELL<KNQQEVGQNC-HVFEMSNDDPQKEEEIRKYSAMYGRFDSNKKDGKHLTLHELTVNEAAAQFYVK |
Parental | DNALLTRRDELFALARQISREVTYKYTYRTTKSKCGERDELSPKRIKVE |
DNA.LTRRDELFALAR.ISREVTY.YTYR..KS.CGERDELS.KRIK.E | |
Retrocopy | DNAQLTRRDELFALARHISREVTYEYTYRYIKSTCGERDELSLKRIKIE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000010241 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000005748 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000013842 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000007306 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000006665 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000013025 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000000098 | 1 retrocopy |
retro_itri_1621 ,
|
Tupaia belangeri | ENSTBEG00000011954 | 1 retrocopy |