RetrogeneDB ID:

retro_mmur_1211

Retrocopy
location
Organism:Mouse Lemur (Microcebus murinus)
Coordinates:scaffold_33146:3884..5100(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:NAB1
Ensembl ID:ENSMICG00000007306
Aliases:None
Description:NGFI-A binding protein 1 (EGR1 binding protein 1) [Source:HGNC Symbol;Acc:7626]


Retrocopy-Parental alignment summary:






>retro_mmur_1211
ATGGCAGCAGCCTTACCCAGGACCCTGGGGGAGTTGCAAATATGTAGAATACTACAAGAAGCCAGTCTACTTTCTTATTT
TGATGCCTTTATCCAACAAGGTGGTGGTGATGTCCTGCAACTAACTCTATGAAGCTGGAGAAGAGGAATTTTTGAAAATC
ATGGCACTTCTGGGCATGGCTAGCAAGCCCCTTCACGTTAGAAGGCTACAGAAGGCTTTGAGAGACTGGGTTACAAACCC
TGGCCTTTCCAATCAGCCTCTAACTGCCCTTCCGTCAGTAGCGTACCCATCTGTCAATTACCAGAAGGATCACCAACATG
GCTGGGAACACCCTGCAGAAGTTATGAAAAAAGAGTGACGCTCGGGAACCTCATTTTAAAAATCTGTGAATGTGGTGCCA
CCACCTGTGTGCAGAGCTTGAGACAGGGGAAGTCAGATGTGGGGAGCTGGGCACCACAGAGTGAGTGTTGGGGACTCCAG
ACTCTGGCAAGGTCCCCATGCCTCTGAGAGGGAGCACAGTCCCTCCCCCGCACACCTGGCCCCCCAGCCTCTGCCAAGGA
AGGCAGCGAGGCCCTGGCTGCTGCTGCGCTCTCTGTGGCTGACTGTGTGGAAGCAATGGCCCCCACACTACCCAGAAGTC
ACAAGAACGAGGTGAAAGAGCTGCTACAAACCAACAAGAAGATGGCCTAAATGACTGGTCACATCTTTGAGGTGACTGAT
GATGGTCCACACAAAGAAGAGGAAATTTGGAAAGACAGGGCAATCTATGGCACATTTCACTCCAAGAGAAAGGATGGGAA
ACATCTCCCGTTTCAGGAGCTCACTGTTATGAAGCAGCTGCTCCATTCTGTGTGAAGGGTATGCTCTGCTGACGAGAAGA
GATGAGCTTTTTGCCCTGGCCATGCATATTTCTCAAGAAGTCACCTATAAACGTACTTACAGAACCACCAAGTCAAAATG
TGGAGAATGAGATGAATTATCCCCAAAGAGAGTTAAAGTGGAGGATGGGTTTCCAGATTTCCAGGATTCTGTGCAAATGC
TCTTCCCGCAGGCCAGAGGTAAGAGTGAAGGACTTGAGGCTCTTAGCTCACAGCAGCCGGAAAAGGTGAGGGCAGAGCAG
AGGGAGTTCCTCTGCACCCAAGCTGGCTGTGAGAGACTGCAGCATGCTGAGAGGAGACGGCAGGACTTTACAGCAGGGCT
CAGAAGAGCACCGTCC

ORF - retro_mmur_1211 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 73.98 %
Parental protein coverage: 87.99 %
Number of stop codons detected: 3
Number of frameshifts detected 6


Retrocopy - Parental Gene Alignment:

ParentalMAAALPRTLGELQLYRILQKANLLSYFDAFIQQG-GDDVQQ-LCEAGEEEFLEIMALVGMASKPLHVRRL
MAAALPRTLGELQ..RILQ.A.LLSYFDAFIQQG.GD..Q..L.EAGEEEFL.IMAL.GMASKPLHVRRL
RetrocopyMAAALPRTLGELQICRILQEASLLSYFDAFIQQGGGDVLQL>LYEAGEEEFLKIMALLGMASKPLHVRRL
ParentalQKALRDWVTNPGLFNQPLTSLP-VSSIPIYKLPEGSPTWLGISCSSYE-RNSNAREPH-LKIPKCAATTC
QKALRDWVTNPGL.NQPLT.LP.VSS.PI..LPEGSPTWLG..C.SYE...S.AREPH.LKI..C.ATTC
RetrocopyQKALRDWVTNPGLSNQPLTALP<VSSVPICQLPEGSPTWLGTPCRSYE<KKSDAREPH>LKICECGATTC
ParentalVQSLGQGKSDVLGSLALPSV--GESRLWQGPHATESEHSLSPADLGSPASPKESSEALDAAAALSVAECV
VQSL.QGKSDV.GS.A..S...G...L...P...E...SL.P...G.PAS.KE.SEAL.AAAALSVA.CV
RetrocopyVQSLRQGKSDV-GSWAPQSECWGLQTLARSPCL*EGAQSL-PRTPGPPASAKEGSEAL-AAAALSVADCV
ParentalERMAPTLPKSDLNEVKELLKTNKKLAKMIGHIFEMSDDDPHKEEEIRKYSAIYGRFDSKRKDGKHLTLHE
E.MAPTLP.S..NEVKELL.TNKK.A.M.GHIFE..DD.PHKEEEI.K..AIYG.F.SKRKDGKHL...E
RetrocopyEAMAPTLPRSHKNEVKELLQTNKKMA*MTGHIFEVTDDGPHKEEEIWKDRAIYGTFHSKRKDGKHLPFQE
ParentalLTV-NEAAAQLCVK-DNALLTRRDELFALARQISREVTYKYTYRTTKSKCGERDELSPKRIKVEDGFPDF
LTV..EAAA..CVK...ALLTRRDELFALA..IS.EVTYK.TYRTTKSKCGE.DELSPKR.KVEDGFPDF
RetrocopyLTV<YEAAAPFCVK<GYALLTRRDELFALAMHISQEVTYKRTYRTTKSKCGE*DELSPKRVKVEDGFPDF
ParentalQDSVQTLFQQARAKSEELAALTSQQPEKVMAKQMEFLCTQAGYERLQHAERR---LSAGLYRQSS
QDSVQ.LF.QAR.KSE.L.AL.SQQPEKV.A.Q.EFLCTQAG.ERLQHAERR.....AGL.R..S
RetrocopyQDSVQMLFPQARGKSEGLEALSSQQPEKVRAEQREFLCTQAGCERLQHAERRRQDFTAGLRRAPS

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Microcebus murinus was not studied using RNA-Seq expression data.
Microcebus murinus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmur_1211 retrocopy.
Microcebus murinus was not studied using FANTOM5 data.
retro_mmur_1211 was not experimentally validated.

Retrocopy orthology:
Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 8 parental genes, and 9 retrocopies.

Species Parental gene accession Retrocopies number
Choloepus hoffmanni ENSCHOG000000102411 retrocopy
Callithrix jacchus ENSCJAG000000057481 retrocopy
Gorilla gorilla ENSGGOG000000138421 retrocopy
Microcebus murinus ENSMICG00000007306 2 retrocopies
retro_mmur_1155, retro_mmur_1211 ,
Nomascus leucogenys ENSNLEG000000066651 retrocopy
Pongo abelii ENSPPYG000000130251 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000000981 retrocopy
Tupaia belangeri ENSTBEG000000119541 retrocopy



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