RetrogeneDB ID: | retro_mmur_1155 | ||
Retrocopylocation | Organism: | Mouse Lemur (Microcebus murinus) | |
Coordinates: | scaffold_26704:6668..7524(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NAB1 | ||
Ensembl ID: | ENSMICG00000007306 | ||
Aliases: | None | ||
Description: | NGFI-A binding protein 1 (EGR1 binding protein 1) [Source:HGNC Symbol;Acc:7626] |
Percent Identity: | 90.97 % |
Parental protein coverage: | 62.23 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | PHATES-EHSLSPADLGSPASPKESS-EALDAAAALSVAECVERMAPTLPKSDLNEVKELLKTNKKLAKM |
PHATE..EHSLSPADLGSPASPKES...ALDAAAALSVA.CVERMAPTLPKSDL.EVKELLKTNKKLAKM | |
Retrocopy | PHATEG<EHSLSPADLGSPASPKESGGRALDAAAALSVAQCVERMAPTLPKSDLSEVKELLKTNKKLAKM |
Parental | IGHIFEMSDDDPHKEEEIRKYSAIYGRFDSKRKDGKHLTLHELTVNEAAAQLCVKDNALLTRRDELFALA |
..HIFEMSD.DPHKEEEIRKYSA.YGRFDSK.KDGKHL.LHELTV.EAAA.LCVK.NALLTRR.ELFALA | |
Retrocopy | FSHIFEMSDVDPHKEEEIRKYSATYGRFDSKKKDGKHLMLHELTVKEAAARLCVKNNALLTRRHELFALA |
Parental | RQISREVTYKYTYRTTKSKCGERDELSPKRIKVEDGFPDFQDSVQTLFQQARAKSEELAALTSQQPEKVM |
RQISREVT.KYTYRTTKSKCGER.E.SPKRIKVEDGFPDFQDSVQTLFQQARAKSEELAALTSQQPEKV. | |
Retrocopy | RQISREVTHKYTYRTTKSKCGEREE*SPKRIKVEDGFPDFQDSVQTLFQQARAKSEELAALTSQQPEKVT |
Parental | AKQMEFLCTQAGYERLQHAERRLSAGLYRQS-SEEHSPNGLTSDNSDGQGERPLNLRMPNLQNRQPHHFV |
AKQMEFLCTQAGYERLQHAERRL.AGLYRQS..EEHSPNGLTS.NSDGQGERPLNLR.PNLQNRQPHHFV | |
Retrocopy | AKQMEFLCTQAGYERLQHAERRLPAGLYRQS<LEEHSPNGLTSNNSDGQGERPLNLRIPNLQNRQPHHFV |
Parental | VDGELSRL |
VDGELSRL | |
Retrocopy | VDGELSRL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000010241 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000005748 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000013842 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000007306 | 2 retrocopies |
retro_mmur_1155 , retro_mmur_1211,
|
Nomascus leucogenys | ENSNLEG00000006665 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000013025 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000000098 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000011954 | 1 retrocopy |