RetrogeneDB ID: | retro_itri_1810 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393858.1:127458..127812(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NDUFB5 | ||
Ensembl ID: | ENSSTOG00000010557 | ||
Aliases: | None | ||
Description: | NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5, 16kDa [Source:HGNC Symbol;Acc:7700] |
Percent Identity: | 65.29 % |
Parental protein coverage: | 81.76 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | FLKLLRFYILLTGLPVAIGITLVNVFIGEAELAEIPEGYIPEHWEYYKHPISRWIARTFFDCPEKNYERT |
F..LL.F.IL.TGL.VAIGI.LVNVFIG...LA...E.YI....EYYKHPISRWI..TFFD.PEKN.ER. | |
Retrocopy | FKNLLKFCILFTGLSVAIGIILVNVFIG*TKLAKVLENYI---LEYYKHPISRWIIHTFFDYPEKN*ERK |
Parental | MAVLQIESEKAELRLKELEVRRLMRERGDGPWYQYPTPDKALIDHSPKATP |
.A.L.IESEK..L.LKELEV.R...ER...PW.QY.T.DKALIDHS.K..P | |
Retrocopy | IATLHIESEKDALHLKELEVERVICERSNEPW*QYSTIDKALIDHSSKQLP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000002684 | 1 retrocopy | |
Equus caballus | ENSECAG00000000682 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000019363 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000014166 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000000999 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000009746 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000021300 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000014493 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000004286 | 1 retrocopy | |
Sorex araneus | ENSSARG00000006918 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000011764 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000010557 | 1 retrocopy |
retro_itri_1810 ,
|
Tursiops truncatus | ENSTTRG00000008910 | 3 retrocopies |