RetrogeneDB ID: | retro_mmul_2619 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | X:95628836..95629199(-) | ||
Located in intron of: | ENSMMUG00000020862 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NDUFB5 | ||
Ensembl ID: | ENSMMUG00000009746 | ||
Aliases: | None | ||
Description: | NADH dehydrogenase [Source:RefSeq peptide;Acc:NP_001253462] |
Percent Identity: | 70.25 % |
Parental protein coverage: | 64.02 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | FLKLLRFYIALTGIPVVIIITLVNVFIGEAELAEIPEGYIPEHWEYYKHPISRWIARNFYDSPEKIYEKS |
FL.LL.FYI..TGIPV.I..TLVNVFIGE.EL.EIPEGYIPE.WEYYKHPI.RWI...FYD.PE..Y... | |
Retrocopy | FLNLLKFYILFTGIPVAIGDTLVNVFIGETELVEIPEGYIPEQWEYYKHPILRWIVHIFYDDPENNYKRT |
Parental | MAVLQIEAEKAELRLKELEVRRLMRMRGDGPWYYYETIDKELIDHSPKATP |
MA.LQ.E.EKAEL..KELEVRRL...R.DGPWY.Y.T.D....DHSPKATP | |
Retrocopy | MAILQTETEKAELQIKELEVRRLI*KRRDGPWYQYLTTDRATMDHSPKATP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 40 .56 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 39 .51 RPM |
SRP007412_cerebellum | 0 .00 RPM | 36 .87 RPM |
SRP007412_heart | 0 .00 RPM | 89 .62 RPM |
SRP007412_kidney | 0 .00 RPM | 67 .84 RPM |
SRP007412_liver | 0 .00 RPM | 14 .25 RPM |
SRP007412_testis | 0 .04 RPM | 32 .19 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000002684 | 1 retrocopy | |
Equus caballus | ENSECAG00000000682 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000019363 | 1 retrocopy | |
Homo sapiens | ENSG00000136521 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000014166 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000000999 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000009746 | 1 retrocopy |
retro_mmul_2619 ,
|
Monodelphis domestica | ENSMODG00000021300 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000005842 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000014493 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000015649 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000004286 | 1 retrocopy | |
Sorex araneus | ENSSARG00000006918 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000011764 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000010557 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000008910 | 3 retrocopies |