RetrogeneDB ID: | retro_itri_1813 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393868.1:254647..255320(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TFAP2C | ||
Ensembl ID: | ENSSTOG00000014299 | ||
Aliases: | None | ||
Description: | transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma) [Source:HGNC Symbol;Acc:11744] |
Percent Identity: | 79.65 % |
Parental protein coverage: | 60.7 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 5 |
Parental | SDLLLPHAHALDAAGLAENLGLHD-MAHQMEEVQNVDDPHLLGPDQTVIRKGPI-SMTKNPLGLPCQKEL |
S.LLLPHAHALDAAGL..NLGLH...AHQMEEVQNV..PHL.GPDQTVIRKG.I.S.TKNPLGLPCQKEL | |
Retrocopy | SVLLLPHAHALDAAGLTKNLGLHH>VAHQMEEVQNVN-PHLFGPDQTVIRKGLI>SKTKNPLGLPCQKEL |
Parental | VGAVMNPS-EVFCSVPGRLSLLSSTSKYK-VTVAEVQRRLSPPECLNASLLGGVLRRAKSKNGGRSLREK |
V.A.MNP..EVFCSV.GRLSL.SSTSKYK.VTVA.VQRRL.P.ECLNASLLGGVLR.AKSKNG..SL.EK | |
Retrocopy | VVAMMNPL<EVFCSVLGRLSLFSSTSKYK<VTVAAVQRRLLPSECLNASLLGGVLRKAKSKNG*-SLQEK |
Parental | LDKIGLNLPAGRRKAAHVTLLTSLVEGEAVHLARDFAYVCEAEFPSKPVA-EYLTRPHLGGRNEMATRKN |
LDK.GLNLPAGRRKAA.V.LLTSLVEG.AV.LA.DFAYVCE.EFP.KPVA.E.LTRPHL.G...M..RKN | |
Retrocopy | LDKTGLNLPAGRRKAALVSLLTSLVEGKAVNLAWDFAYVCEVEFPRKPVA>EHLTRPHLVG*SKMEMRKN |
Parental | --TLLAAQQVCKEFTDLLNQD |
...L.AAQQVCKEFT.LLNQD | |
Retrocopy | NAALRAAQQVCKEFTELLNQD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000011025 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000007703 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000010003 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000016445 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000033901 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000013654 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000001781 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000014299 | 3 retrocopies |
retro_itri_1741, retro_itri_1801, retro_itri_1813 ,
|
Tursiops truncatus | ENSTTRG00000005983 | 1 retrocopy |