Parental gene:

TFAP2C, ENSPTRG00000013654

Aliases:None
Description:transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma) [Source:HGNC Symbol;Acc:11744]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:20:53797335..53807885(+)


>ENSPTRG00000013654
ATGTTGTGGAAAATAACCGATAATGTCAAGTACGAAGAGGACTGCGAGGATCGCCACGACGGGAGCAGCAATGGGAATCC
GCGAGTCCCCCACCTCTCCTCCGCCGGGCAGCACCTCTACAGCCCCGCGCCACCCCTCTCCCACACTGGAGTCGCCGAAT
ATCAGCCGCCACCCTACTTTCCCCCTCCCTACCAGCAGCTGGCCTACTCCCAGTCGGCCGACCCCTACTCGCATCTGGGG
GAAGCGTACGCCGCCGCCATCAACCCCCTGCACCAGCCGGCGCCCACAGGCAGCCAGCAGCAGGCCTGGCCCGGCCGCCA
GAGCCAGGAGGGAGCGGGGCTGCCCTCGCACCACGGGCGCCCGGCCGGCCTGCTGCCCCACCTCTCCGGGCTGGAGGCGG
GCGCGGTGAGCGCCCGCAGGGATGCCTACCGCCGCTCCGACCTGCTGCTGCCCCACGCACACGCCCTGGATGCCGCGGGC
CTGGCCGAGAACCTGGGGCTCCACGACATGCCTCACCAGATGGACGAGGTGCAGAATGTCGACGACCAGCACCTGTTGCT
GCACGATCAGACAGTCATTCGCAAAGGTCCCATTTCCATGACCAAGAACCCTCTGAACCTCCCCTGTCAGAAGGAGCTGG
TGGGGGCCGTAATGAACCCCACTGAGGTCTTCTGCTCGGTCCCTGGAAGATTGTCGCTCCTCAGCTCTACGTCTAAATAC
AAAGTGACAGTGGCTGAAGTACAGAGGCGACTGTCCCCACCTGAATGCTTAAATGCCTCGTTACTGGGAGGTGTTCTCAG
AAGAGCCAAATCGAAAAATGGAGGCCGGTCCTTGCGGGAGAAGTTAGACAAGATTGGGTTGAATCTTCCGGCTGGGAGGC
GGAAAGCCGCTCATGTGACTCTCCTGACATCCTTAGTAGAAGGTGAAGCTGTGCATTTGGCTAGGGACTTTGCCTATGTC
TGTGAAGCCGAATTTCCTAGTAAACCAGTGGCAGAATATTTAACCAGACCTCATCTCGGAGGACGAAATGAGATGGCAGC
TAGGAAGAACATGCTATTGGCGGCCCAGCAACTGTGTAAAGAATTCACAGAACTTCTCAGCCAAGACCGGACACCCCATG
GGACCAGCAGGCTCGCCCCAGTCTTGGAGACGAACATACAGAACTGCTTGTCTCATTTCAGCCTGATTACCCACGGGTTT
GGCAGCCAGGCCATCTGTGCCGCGGTGTCTGCCCTGCAGAACTACATCAAAGAAGCCCTGATTGTCATAGACAAATCCTA
CATGAACCCTGGAGACCAGAGTCCAGCTGATTCTAACAAAACCCTGGAGAAAATGGAGAAGCACAGGAAATAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 0 .20 RPM
SRP007412_cerebellum 0 .04 RPM
SRP007412_heart 0 .09 RPM
SRP007412_kidney 0 .21 RPM
SRP007412_liver 0 .00 RPM
SRP007412_testis 0 .11 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000011025 ortholog_one2one 1 retrogene
retro_chof_1226,
Macropus eugenii ENSMEUG00000007703 ortholog_one2one 1 retrogene
retro_meug_166,
Myotis lucifugus ENSMLUG00000010003 ortholog_one2many 2 retrogenes
retro_mluc_284, retro_mluc_5,
Monodelphis domestica ENSMODG00000016445 ortholog_one2one 1 retrogene
retro_mdom_728,
Otolemur garnettii ENSOGAG00000033901 ortholog_one2many 1 retrogene
retro_ogar_1767,
Ictidomys tridecemlineatus ENSSTOG00000014299 ortholog_one2one 3 retrogenes
retro_itri_1741, retro_itri_1801, retro_itri_1813,
Tursiops truncatus ENSTTRG00000005983 ortholog_one2one 1 retrogene
retro_ttru_535,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_1933 97.93 96.44
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Download FASTA sequences of all ENSPTRG00000013654 retrocopies