Parental gene: | TFAP2C, ENSSTOG00000014299 |
| Aliases: | None |
| Description: | transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma) [Source:HGNC Symbol;Acc:11744] |
| Organism: | Squirrel (Ictidomys tridecemlineatus) |
| Coordinates: | JH393685.1:491273..498732(+) |
>ENSSTOG00000014299
ATGTTGTGGAAAATAACCGATAATGTCAAGTACGAAGAGGACTGCGAGGATCGCCACGATGCGAGTAGCAACGGGAACCC
GCGCATCCCCCACCTCTCCTCGGCCGGGCAGCATCTTTACAGCTCCGCACCGCCGCTGTCCCACACTGGAGTCGCCGAAT
ACCAGCCGCCACCCTACTTTCCACCGCCCTACCAGCAGCTGGCTTACTCTCAGTCGGCAGATCCCTACTCGCATCTGGGC
GAAGCCTACGCTGCGGCCATCAACCCCCTGCACCAGCCTGCAGCCGCCGGCAACCAACAGCAGGCCTGGCCCGGCCGCCA
GAGCCAGGAGGGCGCCGCCCTGCCTTCGCACCACGCGCGCCCGGCCAGCCTGCTCCCCCACCTCTCCGGGCTGGAGGGAG
GTGCCGTGGGCGCCCGCAGGGATGCCTACCGCCGCTCGGACCTGCTGTTGCCCCACGCACACGCCTTGGACGCCGCGGGG
CTGGCGGAGAACCTGGGGCTCCACGACATGGCTCACCAGATGGAAGAGGTGCAGAACGTTGACGACCCACACTTGCTTGG
GCCCGATCAGACTGTAATCCGCAAAGGTCCCATTTCCATGACGAAGAACCCCCTAGGTCTCCCCTGTCAGAAGGAGCTGG
TGGGAGCCGTGATGAATCCCAGTGAAGTCTTCTGCTCGGTTCCAGGAAGACTGTCCCTCCTCAGCTCCACGTCCAAATAC
AAAGTGACGGTGGCTGAAGTGCAGAGGCGGTTGTCACCGCCTGAATGTTTAAATGCCTCGCTGCTGGGAGGTGTTCTCAG
AAGAGCCAAGTCCAAAAATGGAGGCCGATCTTTGCGGGAGAAGTTGGACAAGATTGGGCTGAATCTTCCCGCTGGGAGAC
GGAAAGCTGCTCATGTGACCCTCTTGACATCCTTGGTGGAAGGTGAAGCTGTTCACTTGGCCCGGGACTTTGCGTACGTC
TGTGAAGCCGAGTTTCCTAGTAAGCCAGTGGCCGAATATTTAACCAGGCCTCACCTGGGAGGGCGGAATGAGATGGCGAC
GAGGAAGAATACGCTGCTGGCAGCTCAGCAAGTGTGTAAAGAATTCACGGACCTCCTCAATCAGGAC
ATGTTGTGGAAAATAACCGATAATGTCAAGTACGAAGAGGACTGCGAGGATCGCCACGATGCGAGTAGCAACGGGAACCC
GCGCATCCCCCACCTCTCCTCGGCCGGGCAGCATCTTTACAGCTCCGCACCGCCGCTGTCCCACACTGGAGTCGCCGAAT
ACCAGCCGCCACCCTACTTTCCACCGCCCTACCAGCAGCTGGCTTACTCTCAGTCGGCAGATCCCTACTCGCATCTGGGC
GAAGCCTACGCTGCGGCCATCAACCCCCTGCACCAGCCTGCAGCCGCCGGCAACCAACAGCAGGCCTGGCCCGGCCGCCA
GAGCCAGGAGGGCGCCGCCCTGCCTTCGCACCACGCGCGCCCGGCCAGCCTGCTCCCCCACCTCTCCGGGCTGGAGGGAG
GTGCCGTGGGCGCCCGCAGGGATGCCTACCGCCGCTCGGACCTGCTGTTGCCCCACGCACACGCCTTGGACGCCGCGGGG
CTGGCGGAGAACCTGGGGCTCCACGACATGGCTCACCAGATGGAAGAGGTGCAGAACGTTGACGACCCACACTTGCTTGG
GCCCGATCAGACTGTAATCCGCAAAGGTCCCATTTCCATGACGAAGAACCCCCTAGGTCTCCCCTGTCAGAAGGAGCTGG
TGGGAGCCGTGATGAATCCCAGTGAAGTCTTCTGCTCGGTTCCAGGAAGACTGTCCCTCCTCAGCTCCACGTCCAAATAC
AAAGTGACGGTGGCTGAAGTGCAGAGGCGGTTGTCACCGCCTGAATGTTTAAATGCCTCGCTGCTGGGAGGTGTTCTCAG
AAGAGCCAAGTCCAAAAATGGAGGCCGATCTTTGCGGGAGAAGTTGGACAAGATTGGGCTGAATCTTCCCGCTGGGAGAC
GGAAAGCTGCTCATGTGACCCTCTTGACATCCTTGGTGGAAGGTGAAGCTGTTCACTTGGCCCGGGACTTTGCGTACGTC
TGTGAAGCCGAGTTTCCTAGTAAGCCAGTGGCCGAATATTTAACCAGGCCTCACCTGGGAGGGCGGAATGAGATGGCGAC
GAGGAAGAATACGCTGCTGGCAGCTCAGCAAGTGTGTAAAGAATTCACGGACCTCCTCAATCAGGAC
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000011025 | ortholog_one2one | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000007703 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000010003 | ortholog_one2many | 2 retrogenes | |
| Monodelphis domestica | ENSMODG00000016445 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000033901 | ortholog_one2many | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000013654 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000001781 | within_species_paralog | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000005983 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_itri_1741 | 75.52 | 50.95 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_itri_1801 | 71.94 | 67.21 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_itri_1813 | 79.65 | 60.70 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSSTOG00000014299 retrocopies