>retro_ptro_1933
GATCGCCACAACGGGAGCAGCAATGGGAATCCGCGAGTCCCCCACCTCTCCTCCGCCGGGCAGCACCTCTACAGCCCCGC
GCCACCCCTCTCCCACACTGGAGTCGCCGAGTATCAGCCGCCACCCTACTTTCCCCCTCCCTACCAGCAGCTGGCCTACT
CCCAGTCGGCCGACCCCTACTCGCATCTGGGGGAAGCGTACGCCGCCGCCATCAACCCCCTGCACCAGCCGGCGCCCACA
GGCAGCCAGCAGCAGGCCTGGCCCGGCCGCCAGAGCCAGGAGGGAGCGGGGCTGCCCTCGCACCACGGGCGCCCGGCCGG
CCTGCTGCCCCACCTCTCCGGGCTGGAGGCGGGCGCGGTGAGCGCCGGCAGGGATGCCCACCGCCGCTCCGACCTGCTGC
TGCCACACGCACACGCCCTGGATGCCGCGGGCCTGGCCGAGAACCTGGGGCTCCACGACATGCCTCACTAGATGGACGAG
GTGCAGAATGTCGACGACCAGCACCTGTTGCTGCACGATCAGACAGTCATTCGCAAAGGTCCCATTTCCATGACCAAGAA
CTCTCTGAACCTCCCCTGTCAGAAGGAGCTGGTGGGGGCCGTAATGAACCCCACTGAGGTCTTCCGCTCAGTCCCTGGAA
GATTGTCGCTCCTCAGCTCTACGTCTAAATACAAAGTGACAGTGGCTGAAGTACAGAGGCGACTGTCCCCACCTGAATGC
TTAAATGCCTCGTTACTGGGAGGTGTTCTGAGAAGAGCCAAATCGAAAAATGGAGGCCGGTCCTTGCGGGAGAAGTTGGA
CAAGGTTGGGTTGAATCTTCCGGCTGGGAGACGGAAAGCCGCTCATGTGACTCTCCTGACATCCTTAGTAGAAGGTGAAG
CTGTTCATTTGGCTAGGGACTTTGCCTATATCTGTGAAGCCGAATTTCCTGGTAAACCAGTGGCAGAATACTTAACCAGA
CCTCATCTTGGAGGACGAAATGAGATGGCAGCTAGGAAGAACATGCTATTGGCGGCCCAGCAACTGTGTAAAGAATTCAC
AGAACTTCTCAGCCAAGACCGGACACCCCATGGGACCAGCAGGCTCGCCCCAGTCTTGGAGACGAACATACAGAACTGCT
TGTCTCATTTCAGCCTGATTACCCACGGGTTTGGCAGCCAGGCCATCTGTGCCGCGGTGTCTGCCCTGCAGAACTACATC
AAAGAAGCCCTGATTGTCATAGACAAATCCTACATGAACCCTGGAGACCAGAGTCCAGCTGATTCTAACAAAACCCTGGA
GAAAATGGAGAAGCACAGGAAA
ORF - retro_ptro_1933 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
97.93 % |
Parental protein coverage: |
96.44 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | DRHDGSSNGNPRVPHLSSAGQHLYSPAPPLSHTGVAEYQPPPYFPPPYQQLAYSQSADPYSHLGEAYAAA |
| DRH.GSSNGNPRVPHLSSAGQHLYSPAPPLSHTGVAEYQPPPYFPPPYQQLAYSQSADPYSHLGEAYAAA |
Retrocopy | DRHNGSSNGNPRVPHLSSAGQHLYSPAPPLSHTGVAEYQPPPYFPPPYQQLAYSQSADPYSHLGEAYAAA |
|
Parental | INPLHQPAPTGSQQQAWPGRQSQEGAGLPSHHGRPAGLLPHLSGLEAGAVSARRDAYRRSDLLLPHAHAL |
| INPLHQPAPTGSQQQAWPGRQSQEGAGLPSHHGRPAGLLPHLSGLEAGAVSA.RDA.RRSDLLLPHAHAL |
Retrocopy | INPLHQPAPTGSQQQAWPGRQSQEGAGLPSHHGRPAGLLPHLSGLEAGAVSAGRDAHRRSDLLLPHAHAL |
|
Parental | DAAGLAENLGLHDMPHQMDEVQNVDDQHLLLHDQTVIRKGPISMTKNPLNLPCQKELVGAVMNPTEVFCS |
| DAAGLAENLGLHDMPH.MDEVQNVDDQHLLLHDQTVIRKGPISMTKN.LNLPCQKELVGAVMNPTEVF.S |
Retrocopy | DAAGLAENLGLHDMPH*MDEVQNVDDQHLLLHDQTVIRKGPISMTKNSLNLPCQKELVGAVMNPTEVFRS |
|
Parental | VPGRLSLLSSTSKYKVTVAEVQRRLSPPECLNASLLGGVLRRAKSKNGGRSLREKLDKIGLNLPAGRRKA |
| VPGRLSLLSSTSKYKVTVAEVQRRLSPPECLNASLLGGVLRRAKSKNGGRSLREKLDK.GLNLPAGRRKA |
Retrocopy | VPGRLSLLSSTSKYKVTVAEVQRRLSPPECLNASLLGGVLRRAKSKNGGRSLREKLDKVGLNLPAGRRKA |
|
Parental | AHVTLLTSLVEGEAVHLARDFAYVCEAEFPSKPVAEYLTRPHLGGRNEMAARKNMLLAAQQLCKEFTELL |
| AHVTLLTSLVEGEAVHLARDFAY.CEAEFP.KPVAEYLTRPHLGGRNEMAARKNMLLAAQQLCKEFTELL |
Retrocopy | AHVTLLTSLVEGEAVHLARDFAYICEAEFPGKPVAEYLTRPHLGGRNEMAARKNMLLAAQQLCKEFTELL |
|
Parental | SQDRTPHGTSRLAPVLETNIQNCLSHFSLITHGFGSQAICAAVSALQNYIKEALIVIDKSYMNPGDQSPA |
| SQDRTPHGTSRLAPVLETNIQNCLSHFSLITHGFGSQAICAAVSALQNYIKEALIVIDKSYMNPGDQSPA |
Retrocopy | SQDRTPHGTSRLAPVLETNIQNCLSHFSLITHGFGSQAICAAVSALQNYIKEALIVIDKSYMNPGDQSPA |
|
Parental | DSNKTLEKMEKHRK |
| DSNKTLEKMEKHRK |
Retrocopy | DSNKTLEKMEKHRK |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP007412_brain_prefrontal_cortex |
0 .02 RPM |
0 .20 RPM |
SRP007412_cerebellum |
0 .11 RPM |
0 .04 RPM |
SRP007412_heart |
0 .00 RPM |
0 .09 RPM |
SRP007412_kidney |
0 .00 RPM |
0 .21 RPM |
SRP007412_liver |
0 .00 RPM |
0 .00 RPM |
SRP007412_testis |
0 .00 RPM |
0 .11 RPM |
Pan troglodytes was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ptro_1933 retrocopy.
Pan troglodytes was not studied using FANTOM5 data.
retro_ptro_1933 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ptro_1933 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
8 parental genes, and
11 retrocopies.