>retro_itri_1853
AGGTTTTATGGTCAGCATTCTTCCTATGTTCATGGTGGAGTAGATGCTAGTGGAAAGCCCCAGGAAGCTGTTTATGACCA
AAATGATATACACCACAAAGTGTTATCTCTGAACTTCAGTGAGTGTCATACTAAGATTCGTCATGTGGATGCCCATGCAA
CCTTGAGTGATGGAGTAGTTGTTCTGGTCATGGGTTTACTGTCAAACAGTGGACAGCCAGAAAGGAAGTTTATGCAGACC
TTTGTTCTGGCTCCTGAAGGATCTGTTCCAAATAAATTTTATGTTCACAATGATATGTTTCACTATGAAGATGAAGTACT
TGGTGATTCGGAACCAGAACTTGATGAAGAGTCAGAAGATGAAGTAGAAGAGGGACAAGAAGAAAGACAACCATCTCCTG
AACCTGTGCAAGAAAATGCTAACAGTGGTTACTATGAAGCTCACCCTGTGACTAATGGCATAGAGGAACCTTTGGAAGAA
TCCTCTCATGACCCTGAACCCGAGCCAGAATCTGAAACAAAGACTGAAGAGCTGAAACCACAGGTGGAAGAAAAGAACTT
AGAAGAATTAGAGGAGAAGTCTGCTACTCATCCTCCTGCAGAACCAGTTTCTCTGCCACAAGAACCACCAAAGCCAAGAG
TTGAAGCTAAACCAGAATTTCAATCTCAGCCACCATGTATGCATAAACAACGACCTAGGGAATGACCTGGTTTTCCTCCC
AGATGTCCAAGACCCGGCAGAGGAGATATAGAGCAGAATGACTCTGACAACCATAGAATAATTCGCTATCCAGACAGTCA
TCAGCTTTTTGTTGGTAACTTGCCACATGATATTGATGAAAATGAACTAAAAGAGTTCTTTATGCATTTTGGAAACGTTG
TGGAACTTCACATCAATACCAAGGGTGTTGGGGGAAAGCTTCCAAATTTTGGTTTTGTGATTTTTGATGACTCTGAACCA
GTTCAGAGAATCTTAATCGCAAAAACCATTATGTTTCGAGTGGAGGTATGTTTAAATGTGGAAGAGAAGAAAACCAGACC
TGCAAGAGAGCAAGAAACCAGAGGTGGTGGTGATGATCACAGAGATATTAGGCGCAAAGATTGAGGTCCTGGTGGTCCAC
GTGGTATTGTAGGTGGTGGAATGATGCGGGACCGTGATGGAAGAGGACCTCCTCCAAGAGGCGGCCTGGCGCAGAAACTT
GGCTCTGGGAGAGGAACTGGGCAAATGGAAGGCTATTTCACACGACAGCGTCGC
ORF - retro_itri_1853 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
92.34 % |
Parental protein coverage: |
93.1 % |
Number of stop codons detected: |
2 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | RFYGRNSSYVHGGVDASGKPQEAVYGQNDIHHKVLSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNS |
| RFYG..SSYVHGGVDASGKPQEAVY.QNDIHHKVLSLNFSECHTKIRHVDAHATLSDGVVV.VMGLLSNS |
Retrocopy | RFYGQHSSYVHGGVDASGKPQEAVYDQNDIHHKVLSLNFSECHTKIRHVDAHATLSDGVVVLVMGLLSNS |
|
Parental | GQPERKFMQTFVLAPEGSVPNKFYVHNDMFRYEDEVFGDSEPELDEESEDEVEEEQEERQPSPEPVQENA |
| GQPERKFMQTFVLAPEGSVPNKFYVHNDMF.YEDEV.GDSEPELDEESEDEVEE.QEERQPSPEPVQENA |
Retrocopy | GQPERKFMQTFVLAPEGSVPNKFYVHNDMFHYEDEVLGDSEPELDEESEDEVEEGQEERQPSPEPVQENA |
|
Parental | NSGYYEAHPVTNGIEEPLEESSHDPEPEPESETKTEELKPQVEEKNLEELEEKSTTPPPAEPVSLPQEPP |
| NSGYYEAHPVTNGIEEPLEESSHDPEPEPESETKTEELKPQVEEKNLEELEEKS.T.PPAEPVSLPQEPP |
Retrocopy | NSGYYEAHPVTNGIEEPLEESSHDPEPEPESETKTEELKPQVEEKNLEELEEKSATHPPAEPVSLPQEPP |
|
Parental | KPRVEAKPEVQSQPPRVREQRPRERPGFPPRGPRPGRGDMEQNDSDNRRIIRYPDSHQLFVGNLPHDIDE |
| KPRVEAKPE.QSQPP....QRPRE.PGFPPR.PRPGRGD.EQNDSDN.RIIRYPDSHQLFVGNLPHDIDE |
Retrocopy | KPRVEAKPEFQSQPPCMHKQRPRE*PGFPPRCPRPGRGDIEQNDSDNHRIIRYPDSHQLFVGNLPHDIDE |
|
Parental | NELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEKKTRAARE |
| NELKEFFM.FGNVVEL.INTKGVGGKLPNFGFV.FDDSEPVQRILIAK.IMFR.EV.LNVEEKKTR.ARE |
Retrocopy | NELKEFFMHFGNVVELHINTKGVGGKLPNFGFVIFDDSEPVQRILIAKTIMFRVEVCLNVEEKKTRPARE |
|
Parental | RETRGGGDDRRDIRRNDRGPGGPRGIVGGGMMRDRDGRGPPPRGGMAQKLGSGRGTGQMEGRFTGQRR |
| .ETRGGGDD.RDIRR.D.GPGGPRGIVGGGMMRDRDGRGPPPRGG.AQKLGSGRGTGQMEG.FT.QRR |
Retrocopy | QETRGGGDDHRDIRRKD*GPGGPRGIVGGGMMRDRDGRGPPPRGGLAQKLGSGRGTGQMEGYFTRQRR |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Ictidomys tridecemlineatus was not studied using RNA-Seq expression data.
Ictidomys tridecemlineatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_itri_1853 retrocopy.
Ictidomys tridecemlineatus was not studied using FANTOM5 data.
retro_itri_1853 was not experimentally validated.
Retrocopy orthology:
Ictidomys tridecemlineatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
5 parental genes, and
5 retrocopies.