RetrogeneDB ID: | retro_ogar_810 | ||
Retrocopylocation | Organism: | Bushbaby (Otolemur garnettii) | |
Coordinates: | GL873528.1:25656036..25657194(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | G3BP2 | ||
Ensembl ID: | ENSOGAG00000000157 | ||
Aliases: | None | ||
Description: | GTPase activating protein (SH3 domain) binding protein 2 [Source:HGNC Symbol;Acc:30291] |
Percent Identity: | 65. % |
Parental protein coverage: | 87.08 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 8 |
Parental | VRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQ-EAVYGQNDIHHKVLSLNFSECHTKIRHVDAHA |
..Q.YTL..KAPEYLHR..G.NSS.VHGG.DASGKP..EA....N..HHKVLSL.FS..H.KI....AHA | |
Retrocopy | MKQHYTLVIKAPEYLHRLHGGNSSCVHGGADASGKPR<EALCK*NTMHHKVLSLHFSGFHAKIYQMHAHA |
Parental | T-LSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSVPNKFYVHNDMFRYEDEVFGDSEP-ELDEESEDE |
T.LSD..V.QV.GLLSN.GQPERKFMQTFVL..E.S..N.FY.HNDMF.YEDEVFGDSEP..L.E.SEDE | |
Retrocopy | T<LSDRIVIQVTGLLSNRGQPERKFMQTFVLVSEQSILNTFYIHNDMFHYEDEVFGDSEP<SLYEGSEDE |
Parental | VEEEQEERQPSPEPVQENANSGYYEAH-PVTNGIEEPLDESSHEPEPEPESE-TKTEELKPQVEEKNLEE |
VEEEQEER..S.EP.QENAN.G...A..PVTNG.E..L.E..HEPEP.PESE..KT.ELKPQV.E.NL.E | |
Retrocopy | VEEEQEER*LSSEPRQENANDGHCGAR<PVTNGKEQRLKEPPHEPEPKPESE<NKTKELKPQVMEMNLKE |
Parental | L-EEKSATPPPTEPVSLPQEPPKPRVEAKPEVQSQPPRVREQ-RPRERPGFPPRGPRPGRGDMEQNDSDN |
........PPP..PVSLPQEPPKPRVEAK.EVQSQPPR...Q...RE.P.FPP.GPRPGR.DM.Q.DSDN | |
Retrocopy | VGQAPPPLPPPAKPVSLPQEPPKPRVEAKTEVQSQPPRGHKQ<MARE*PDFPPKGPRPGREDMKQSDSDN |
Parental | RRIIRYPDSHQLF-VGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILI |
.RI..Y..S...F.V.NL..DI.ENE.KEF.MSFGNVVE..IN.KG.G.KLPN..FV.FD..EPVQ.I.. | |
Retrocopy | YRIVHYLES-SIF>VDNLSFDIYENEPKEFLMSFGNVVEFHINIKGLGEKLPNLRFVGFDGYEPVQ*IF- |
Parental | AKPIMFRGEVRLNVEEKKTRAARERETRGGGDDRRDIRRNDRG-PGGPRG |
.K.IMF..EV..N.EEKK.RA.R..E..G.GDD.RDI...D.G..GGP.G | |
Retrocopy | -KTIMF-PEVCSNMEEKKLRASRQ*ENKGSGDDCRDISLSDQG<SGGPCG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000019897 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000016219 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000014947 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000000157 | 1 retrocopy |
retro_ogar_810 ,
|
Otolemur garnettii | ENSOGAG00000001726 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000012975 | 1 retrocopy |